TTTTTGTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTTTATGACAGATTCCTGCTATTAATATGCTTTTCC
TGTTATTATTAAAGATATATATTAATCACTAGGTAGTAGCACACCCCTTT
GGAGCAGATCTCTGCAGAGCCAAGAAGATGTACTGTCTTGTAGTGAAGGT
ATATAGACAAATAGATGACTTCTTAAGTCTTAATGAGGATCCTGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCGCTATGTTCATAGCAGCCTTATTTATAATATCCAGAAGCTGGAA
AGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATATGGTACA
TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAACAAATTTATGAAA
TCATAAGGCAAATGGATGGACCTGGAGGGTATCATCTTGAGTGAGGTAAC
CCAATCACAAAAGAACTCGCATGATATGTACTCACTGATAAGTGGATATT
AGTCCAGAAACTTAGAATACCCAAGATATAAGTTGCAAAACACATGAAAA
TCAAGAAGAACGAAGACCAAAAGACCAAAGTGTGGTCACTTTACCTCTTC
TTAGAAATGGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAA

TTTTAGGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCCCATTGAGAAACAGAA
CAGCCAATTTTAAAATAAACACTTATTAAATGTTATACCCTGGATGCCCC
CTCAGATTTCATGCTGAAATCAAATGTGATAATGCAAGTGCCAATTCAAT
GGATTTTTAAAGTTGTTTAGGTCAGGATTATTCCTTGAAAAGACTGATAA
TGTTTTGTGGAAGTGGTTATTGAAATAAAAATGGGTGGGTTCAGCTGAAT
TCACTTGTTTAACATAAAGGGATCCTCCATAATCTCATACCATGGCTTTA
GATATTGCTATTATGTTTCTTCTTCATAGGTTTCCAGCCTATCGTACTCT
ATCATAGTAGAAGAAAATGCATCACAATAGGAGGCATCAGACATTTCGCA
CAATTGCATGAAAACTACTCCTCATCATCCCCATCTTCTGGGTGAGTAAT
GCATCCCAAAGTGATTAAAGGACATAAAGCCAGAACTCAGAGACCTTTCC
AGCTTTCAAACTGGTTGTCATCTACCTATTGTCTCTTCCTTGCTATATTA
GAGACTTATATTTCTAAATTTAACCAGAGACCAAACTAAAATTTCTAGAA
TAATGAAAGAGAAAAAAATTCTGAGTTATTCTACCACTCTTAGATTTGCT
TCTGGAAAATAGAGCAAATATAGGTT

Query= MSMg01no540_g08.g1 MSMg01no540_g08.g1 CHROMAT_FILE:
MSMg01no540_g08.g1 PHD_FILE: MSMg01no540_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:39 2005
         (581 letters)



>mm_chr4_110745549_110746529
          Length = 981

 Score = 1108 bits (573), Expect = 0.0
 Identities = 579/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatcccattgagaaacagaacagccaattttaaaataaacacttattaaatgttatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctatcccattgagaaacagaacagccaattttaaaataaacacttattaaatgttatacc 722

                                                                       
Query: 61  ctggatgccccctcagatttcatgctgaaatcaaatgtgataatgcaagtgccaattcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctggatgccccctcagatttcatgctgaaatcaaatgtgataatgcaagtgccaattcaa 662

                                                                       
Query: 121 tggatttttaaagttgtttaggtcaggattattccttgaaaagactgataatgttttgtg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 661 tggatttttaaagttgtttaggtcaggattactccttgaaaagactgataatgttttgtg 602

                                                                       
Query: 181 gaagtggttattgaaataaaaatgggtgggttcagctgaattcacttgtttaacataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaagtggttattgaaataaaaatgggtgggttcagctgaattcacttgtttaacataaag 542

                                                                       
Query: 241 ggatcctccataatctcataccatggctttagatattgctattatgtttcttcttcatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggatcctccataatctcataccatggctttagatattgctattatgtttcttcttcatag 482

                                                                       
Query: 301 gtttccagcctatcgtactctatcatagtagaagaaaatgcatcacaataggaggcatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtttccagcctatcgtactctatcatagtagaagaaaatgcatcacaataggaggcatca 422

                                                                       
Query: 361 gacatttcgcacaattgcatgaaaactactcctcatcatccccatcttctgggtgagtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacatttcgcacaattgcatgaaaactactcctcatcatccccatcttctgggtgagtaa 362

                                                                       
Query: 421 tgcatcccaaagtgattaaaggacataaagccagaactcagagacctttccagctttcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcatcccaaagtgattaaaggacataaagccagaactcagagacctttccagctttcaa 302

                                                                       
Query: 481 actggttgtcatctacctattgtctcttccttgctatattagagacttatatttctaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 actggttgtcatctacctattgtctcttccttgctatattagagacttagatttctaaat 242

                                                    
Query: 541 ttaaccagagaccaaactaaaatttctagaataatgaaaga 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaaccagagaccaaactaaaatttctagaataatgaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)