Query= MSMg01no540_h11.b1 MSMg01no540_h11.b1 CHROMAT_FILE:
MSMg01no540_h11.b1 PHD_FILE: MSMg01no540_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
(594 letters)
>mm_chr4_139698969_139699962
Length = 994
Score = 1141 bits (590), Expect = 0.0
Identities = 593/594 (99%)
Strand = Plus / Plus
Query: 1 ggtatcatcgaaccaccttaaatagtaagatttatttattctttcactcatgtattcatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ggtatcatcgaaccaccttaaatagtaagatttatttattcattcactcatgtattcatt 260
Query: 61 tgcctgtttgcttgcttatgtgtgtatgtcatgtgagtgctggtattctcgaaggccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctgtttgcttgcttatgtgtgtatgtcatgtgagtgctggtattctcgaaggccact 320
Query: 121 agagggtgctataacccttggtgttggagcttcaggtaaccttgggaaagtcctctgtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagggtgctataacccttggtgttggagcttcaggtaaccttgggaaagtcctctgtag 380
Query: 181 gagcagcaagcactcttgactactgagccgtctgtccgtctctccagcccaccctgctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagcaagcactcttgactactgagccgtctgtccgtctctccagcccaccctgctag 440
Query: 241 agtcacagaaagtctaagaagagggtgaattggaatctgagcatcttggctgcaggatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcacagaaagtctaagaagagggtgaattggaatctgagcatcttggctgcaggatct 500
Query: 301 gagtgttgatgacttaggagacgatgccactccggggcctgttacctcttcgtgcattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgttgatgacttaggagacgatgccactccggggcctgttacctcttcgtgcattag 560
Query: 361 gaagaggaaggtcattgctatttgcaggtgatgtaattatataacaattaagaaagttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagaggaaggtcattgctatttgcaggtgatgtaattatataacaattaagaaagttga 620
Query: 421 aagacagcctaccagaactgacgagtgtcagtacaatgtttgcctagatggctggcctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagacagcctaccagaactgacgagtgtcagtacaatgtttgcctagatggctggcctgc 680
Query: 481 atacatcagcagtttccttccctctccagggaccccagtgtgccatgaggggcactgtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atacatcagcagtttccttccctctccagggaccccagtgtgccatgaggggcactgtgg 740
Query: 541 gcttctgaggctgcttgtaggggtagagggtggggacagggatgggtcagtagg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcttctgaggctgcttgtaggggtagagggtggggacagggatgggtcagtagg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_h11.g1 MSMg01no540_h11.g1 CHROMAT_FILE:
MSMg01no540_h11.g1 PHD_FILE: MSMg01no540_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
(632 letters)
>mm_chr4_139847806_139848841
Length = 1036
Score = 1129 bits (584), Expect = 0.0
Identities = 622/636 (97%), Gaps = 4/636 (0%)
Strand = Plus / Minus
Query: 1 atttctcgaacaggagaagggaagggcttgaa---aaa-aaagttagaaagaaaagctac 56
|||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 836 atttctcgaacaggggaagggaagggcttgaaaagaaagaaagaaagaaagaaaagctac 777
Query: 57 cagggtcatgagtctgaaaggtcaaattacaggacccctctacagctaggagttcaggac 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cagggtcatgagtctgaaaggtcaaattacaggacccctctacagctaggagttcaggac 717
Query: 117 acaatctggatattatggggctctcgtggcatgccatgctgaagtgtgaggatctgcaag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 acaatctggatattatggggctctcgtggcatgccatgctgaagtgtgaggatctgcaag 657
Query: 177 atgctccagacagcttctgcattcattgcaccgtctgcctattgctagagaaggggagag 236
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 656 gtgctccagacggcttctgcattccttgcaccgtctgcctattgctagagaaggggagag 597
Query: 237 catatgtgagccagaatcagtcaccaatcccttatcctgagcgtgcaaccccatgtctct 296
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 596 cagatgtgagccagaatcagtcaccaatcccttatcctgagcatgcaaccccatgtctct 537
Query: 297 ggcctccagctctgcatcgccatgagcatcaccatgagctgaccacgccctcaccccaac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggcctccagctctgcatcgccatgagcatcaccatgagctgaccacgccctcaccccaac 477
Query: 357 ccccatctcagagaactttccctggagcttgcaaggagagactgacttctagacttccaa 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccccatctcagagaagtttccctggagcttgcaaggagagactgacttctagacttccaa 417
Query: 417 gccctttcttcctggagtttggacatgatctctggggtggtctgtccagaggagacagtc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gccctttcttcctggagtttggacatgatctctggggtggtctgtccagaggagacagtc 357
Query: 477 atgtcaccactccctgtgtcatcgtaaaatgtcaggatgtctgtgctctttatttataga 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atgccaccactccctgtgtcatcgtaaaatgtcaggatgtctgtgctctttatttataga 297
Query: 537 catattgcttttcaacttttctcactccaacatttcagtgtgttatttctgaagataaat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 catattgcttttcaacttttctcactccaacatttcagtgtgttatttctgaagataaat 237
Query: 597 gcacattacagtttcataatagaaactgcatctctc 632
||||||||||||||||||||||||||||||||||||
Sbjct: 236 gcacattacagtttcataatagaaactgcatctctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1036
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1026
Effective search space: 638172
Effective search space used: 638172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
