Query= MSMg01no540_h21.b1 MSMg01no540_h21.b1 CHROMAT_FILE:
MSMg01no540_h21.b1 PHD_FILE: MSMg01no540_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:46 2005
(174 letters)
>mm_chr4_8810573_8811146
Length = 574
Score = 311 bits (161), Expect = 1e-89
Identities = 170/173 (98%)
Strand = Plus / Minus
Query: 1 acacagaagaaaaacaacaaaaataccacttcatataaagtggaagttaaagacctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acacagaagaaaaacaacaaaaataccacttcatataaagtggaagttaaagacctgcat 314
Query: 61 ctgagtttctcctcttctacaagtgcatgtgcaagctctaattcatatatgcaaacttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgagtttctcctcttctacaagtgcatgtgcaagctctaattcatatatgcaaacttac 254
Query: 121 acacatttattttctatttgtgtatgtgtgtgtgtgggggtggggtggggggt 173
|| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 253 acgcatttattttctatttgtgtatgtgtgtgtgggggggtggggtagggggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space: 93956
Effective search space used: 93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no540_h21.g1 MSMg01no540_h21.g1 CHROMAT_FILE:
MSMg01no540_h21.g1 PHD_FILE: MSMg01no540_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:46 2005
(558 letters)
>mm_chr4_8624651_8625606
Length = 956
Score = 1050 bits (543), Expect = 0.0
Identities = 554/559 (99%), Gaps = 4/559 (0%)
Strand = Plus / Plus
Query: 1 ctttaagatgcttccttttgtttggtttgtcagtagtgtgtttctgaggttggagaggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaagatgcttccttttgtttggtttgtcagtagtgtgtttctgaggttggagaggtc 260
Query: 61 atgtccacaggagctctgtggtaatggaaaggtgctggcagctcctgcagtctaggtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtccacaggagctctgtggtaatggaaaggtgctggcagctcctgcagtctaggtatt 320
Query: 121 agtgggctcctcaagtgactgtgcacttgggggctgcctcttctcctgacttcagcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgggctcctcaagtgactgtgcacttgggggctgcctcttctcctgacttcagcagtg 380
Query: 181 actaaggaggcagcagaggtcatatggtgggcttgaattctacaccatgcatttatttt- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaaggaggcagcagaggtcatatggtgggcttgaattctacaccatgcatttatttta 440
Query: 240 atcagtacggggtcaggcacagctcctgctactgaggactgcagatggcatgcgctttca 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 atcagtacggggtcaggcacagctcctgctactgaggactgcagatggcatgcgctttta 500
Query: 300 cctcagcctttgtgtggggaacagctaggaatcagacctgtgtgagcattggtgtgcagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcagcctttgtgtggggaacagctaggaatcagacctgtgtgagcattggtgtgcagc 560
Query: 360 ctcttcttgggaatgtcatcttaaaacagactagcagtggatctgggctctagatacctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcttcttgggaatgtcatcttaaaacagactagcagtggatctgggctctagatacctt 620
Query: 420 gctaattgattccgccccttaccccccagttctgcagcagatttggggactactgtaacc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaattgattccgccccttaccccccagttctgcagcagatttggggactactgtaacc 680
Query: 480 atttaaggagtgtactgtgtctcctattcttttttcggagagactggggcatagtagaaa 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 atttaaggagtgtactgtgtctcctatt---ttttcggagagactggggcatagtagaaa 737
Query: 540 tctgttttgttgatatttc 558
|||||||||||||||||||
Sbjct: 738 tctgttttgttgatatttc 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 956
Length adjustment: 10
Effective length of query: 548
Effective length of database: 946
Effective search space: 518408
Effective search space used: 518408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
