BAC Information

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BAC

Clone NameMSMg01-540K08
Chromosome4 (Build37)
Map Location 104,173,405 - 104,173,952
singlet/doubletsinglet
Overlap geneDab1
Upstream geneLOC665451, LOC100039940, EG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540K08.T7 (MSMg01no540_k08.b1)MSMg01-540K08.TJ (MSMg01no540_k08.g1)
ACCAG606848AG606849
length7171,192
length of high quality
(start - end)		539 (76 - 614)---
definitionCHROMAT_FILE: MSMg01no540_k08.b1 PHD_FILE: MSMg01no540_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:59 2005CHROMAT_FILE: MSMg01no540_k08.g1 PHD_FILE: MSMg01no540_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAGTACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTCCTGATTTCTTCTCTGACCCCTGTGCTCCTGAATTG
AGTCTGTTTACATAAGAAGGTAACATTTGCTTTGTGGGGGTCAAAGTGTA
CACATACCATGTGGGACCTATTGCTACTGATTTCTCTGGAGACTGGGGAC
TAGTTACACCGCAGCTCGCTTACCGGCTGTCACATGCTTTCTTATTGGTT
TACATGTATAGATCCAGTTGTTTACCATCCACATGAGTGCTGCACTCTCA
ATAATTCATAGAAATGTCGTATGAAATTAATCTACAGTGAGAACTCAAAC
TTGACTAAAGCCAAGCCACCGTGCTCAGGAACGTCTTTGTTAACTGACAA
CATCCATCTTGGGTTTCTTTTTTTTTTTTTTTCCTTTCTCGTGTCTCATG
AGTTCCGAATTCTCCTGTAAGAGGAGCCAGATTGAGGAAATCATTAATCT
CTGACAATTGTGTAGATATAATTAAAGATATATGATTATAAAAATACCTG
CTATCTCAAATTACTTCCTAAAGGAACAAGGAGTGGGGACAGAGAGTGTT
CTATTTAAAATGTCAGATTCAGGCACATTAGCTTGAGTAGTCAAAGCACT
GTGTGCCTGTCAGTCATGAAAACTGACAATTAGCTCCATAAATAGATTTT
ACAGGCTGTCATACAAA

CGCGGGGCGGGGTAGGGCGGGGGGTACCGGTGTCTGGGCGCGTGGAGTTC
TTTCATCGCCATAGAGGGGGCTCTCTTTAAGAAAGGTTTCCTGTCGTGGA
AGATCGGGGGGGGGTAGTGTGCGCAGTTTTGTTGCGCCCGGCTCGTCTTT
GTTGGGATGTCGTGTGAGAACGCTCGCGGGCTCAAGATACCGCAGATAGG
GGAGTACAGACCGAATCCTAACAACGCGCCTCTCTTTTGTTCTGTTGTAG
TCTTCCAGAGACCCCCGCCAATTTAATAAGTTCCTGTGGCTTTTGTTGGC
CCCTCACTTTTTTCTTCCTGCTGCTGTCTCCCACCCCAATGTTATAGCAG
GCGGCCGGGAAAGAGAACCCTCTCCGCTAATATTCGTACGTTCAATGAAA
ATGGGAATGGTAGTGAGGAGAAGCGTCTGGGTTGGCTGTACCTGTGTATA
GATGGCAGTACAGCTTTATTGTTCGGCCTGTTATCTTAATTGCAACTTTC
GACGCGGCCACCCGACATGTGTAGCGCGCCCGCGCCCCATCTGTAATAAT
AACAAAGCCCGAGTTGTAGAATCAACACACTCACAAACAATTAATGACCA
TTATAATAATTCCAATTCTTTGATGAGGTATGCGTCGTTCCAAGTGTCGC
CCATTGTAGGCCACGCTAGGTGTGTACAACTATCAAATAATTGCGTGTTC
TCCTGCGGCGTAAGTGATTGCGATAGCAACGCGGCCGCGCGTATTTTATA
TCGCGTCCGCACGGTCGTGGNAGTGGGAAGTTGAATGGCGATATATCCCA
TTCGCACCCTAGGTTGCGAGTTTAAGGTCCGGCATGCTGCGCGGTGGGAT
TTTATATCGTCGAGAAAGCACTGAATCCATATTCATCCACACGTTTACGA
GTCCTCTTTGCTTCCCACCTCAACACTATACCTGCGTTCCGCCCTGTCGG
TGCAGCCACCACATAGCGAAAGAACGCAATCGACGCTTCCGCTACGCCGC
GCTAACACGAGCGGCTGTTAGATCAATGTCGAGCGGCGACGAAACGCAGA
AGTGGAGGAAAATATTGTGAGAGGCACTTTACATCTCAAAATCTCATACC
TCTAACTTCTATACTTATCGCCCGGCCGTTGCTGCACTCGCGCCTCAGTG
TTACTCTGTTTGTGCTGCGATTATAACAGCCGCTGATGACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_k08.b1 MSMg01no540_k08.b1 CHROMAT_FILE:
MSMg01no540_k08.b1 PHD_FILE: MSMg01no540_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:59 2005
         (539 letters)



>mm_chr4_104173214_104174152
          Length = 939

 Score = 1006 bits (520), Expect = 0.0
 Identities = 537/548 (97%), Gaps = 9/548 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgacccctgtgctcctgaattgagtctgtttacataagaaggtaacatttgctttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ctctgacccctgtgctcctgaattgagtctgtttacataagaaggtaacatttgctttgt 251

                                                                       
Query: 61  gggggtcaaagtgtacacataccatgtgggacctattgctactgatttctctggagactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gggggtcaaagtgtacacataccatgtgggacctattgctactgatttctctggagactg 311

                                                                       
Query: 121 gggactagttacaccgcagctcgcttaccggctgtcacatgctttcttattggtttacat 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 312 gggactagttacaccgcagctcgcttactggctgtcacatgctttcttattggtttacat 371

                                                                       
Query: 181 gtatagatccagttgtttaccatccacatgagtgctgcactctcaataattcatagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtatagatccagttgtttaccatccacatgagtgctgcactctcaataattcatagaaat 431

                                                                       
Query: 241 gtcgtatgaaattaatctacagtgagaactcaaacttgactaaagccaagccaccgtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 432 gtcgtatgaaattaatctacagtgagaactcaaacttgactaaagtcaagccaccgtgct 491

                                                                       
Query: 301 caggaacgtctttgttaactgacaacatccatcttgggtttctttt---------ttttt 351
           ||||||||||||||||||||||||||||||||||||||||||||||         |||||
Sbjct: 492 caggaacgtctttgttaactgacaacatccatcttgggtttcttttctttcttttttttt 551

                                                                       
Query: 352 ttttttcctttctcgtgtctcatgagttccgaattctcctgtaagaggagccagattgag 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttttttcctttctcgtgtctcatgagttccgaattctcctgtaagaggagccagattgag 611

                                                                       
Query: 412 gaaatcattaatctctgacaattgtgtagatataattaaagatatatgattataaaaata 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaaatcattaatctctgacaattgtgtagatataattaaagatatatgattataaaaata 671

                                                                       
Query: 472 cctgctatctcaaattacttcctaaaggaacaaggagtggggacagagagtgttctattt 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cctgctatctcaaattacttcctaaaggaacaaggagtggggacagagagtgttctattt 731

                   
Query: 532 aaaatgtc 539
           ||||||||
Sbjct: 732 aaaatgtc 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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