Query= MSMg01no540_p08.b1 MSMg01no540_p08.b1 CHROMAT_FILE:
MSMg01no540_p08.b1 PHD_FILE: MSMg01no540_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:25 2005
(633 letters)
>mm_chr4_32749329_32750361
Length = 1033
Score = 948 bits (490), Expect = 0.0
Identities = 520/540 (96%), Gaps = 17/540 (3%)
Strand = Plus / Minus
Query: 111 aacaaaaacaaaaaaacaaaaattgggtctggagagacagttcagca--taagaacagct 168
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1033 aacaaaaacaaaaaaacaaaaattgggtctggagagacagttcagcatttaagaacagct 974
Query: 169 gttctgagttcaattcccagcaaccacatgggatggatcatgaccatctataaagggatc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 gttctgagttcaattcccagcaaccacatgggatggatcatgaccatctataaagggatc 914
Query: 229 cggtgccttgttctggcatgactcctacatt---------------aaacaaaacaaaac 273
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 913 cggtgccttgttctggcatgactcctacattaaacaaaacaaaacaaaacaaaacaaaac 854
Query: 274 aaaaacaaacaaaaaaaaaccctcataaataaattttaaagactcaagctctgaagcctc 333
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 853 aaaaacaaacaaaaaaaacccctcataaataaattttaaagactcaaactctgaagcctc 794
Query: 334 ttacctcaaactcccaagagccaccacactagacttgagaaagaggccatcatcttacag 393
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttacctcaacctcccaagagccaccacactagacttgagaaagaggccatcatcttacag 734
Query: 394 agaaatatgaatcaaatggctactcacggaagaacgtcaggatggctaccaatgagtttg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agaaatatgaatcaaatggctactcacggaagaacgtcaggatggctaccaatgagtttg 674
Query: 454 ctcattgacacactgagtcgttcatgcagatcgtggttgacttggcctccagttttaatg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctcattgacacactgagtcgttcatgcagatcgtggttgacttggcctccagttttaatg 614
Query: 514 gctttagcatttctttccagcaaatccaaaaggatagggcgcaactggcgaccaagcaaa 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gctttagcatttctttccagcaaatccaaaaggatagggcgcaactggcgaccaagcaaa 554
Query: 574 agggtatagtctttatctaggagcaactgtgccaaggaatccaggatgcattggcgatct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agggtatagtctttatctaggagcaactgtgccaaggaatccaggatgcattggcgatct 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p08.g1 MSMg01no540_p08.g1 CHROMAT_FILE:
MSMg01no540_p08.g1 PHD_FILE: MSMg01no540_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:25 2005
(629 letters)
>mm_chr4_32557442_32558470
Length = 1029
Score = 1168 bits (604), Expect = 0.0
Identities = 625/634 (98%), Gaps = 7/634 (1%)
Strand = Plus / Plus
Query: 1 ccactttttcacttaaacacttgaagtttctttatactattctgaaaagctatcagtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactttttcacttaaacacttgaagtttctttatactattctgaaaagctatcagtttt 260
Query: 61 aaaaaaaagtcgggtacatagttatatagtggaattacataaaacaggaaggaaccttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaagtcgggtacatagttatatagtggaattacataaaacaggaaggaaccttca 320
Query: 121 ttcattcattcattcattcatt----tttgcttactcacttcacatcccgctcactgcct 176
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattcattcattcattcattcatttttgcttactcacttcacatcccgctcactgcct 380
Query: 177 gcctctcagtcaccacctcccacaattctcgccccgccccttccccttctcatctgagca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctctcagtcaccacctcccacaattctcgccccgccccttccccttctcatctgagca 440
Query: 237 ggtgggcccccgggtgtacccccactctggtactt-aagtctctctgaggcttaggtaca 295
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 ggtgggcccccgggtgtacccccactctggtacttcaagtctctctgaggcttaggtaca 500
Query: 296 tcctctcccactgaaaccagacaaagcaactcagctagaagaacatattccacatacagg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctctcccactgaaaccagacaaagcaactcagctagaagaacatattccacatacagg 560
Query: 356 caacagcttttgagataccctcccctgctcccattgttccagaacctcatgaagaccaag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 caacagcttttgagataccctcccctgctcccattgttccagaacctcatgaaaaccaag 620
Query: 416 ctgcacatctgctatgtatgtgaggggaggcctacgtccagcctctatgtatgttctttg 475
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 621 ctgcacatctgctatgtatgtgaggggaggcctacgtccagcc-c-atgtatgttctttg 678
Query: 476 attggtggctcagtctctgagagccccaagggtccaggttagttaactctgttggtcttc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attggtggctcagtctctgagagccccaagggtccaggttagttaactctgttggtcttc 738
Query: 536 ctgtggagttcctatccctataggagtccaaaatcctggaaggactcttttacccatgga 595
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 739 ctgtggagttcctatccctataggagtccgaaatcctggaaggactcttttacccatgga 798
Query: 596 atgatactcaaattttatatatataataaatttt 629
||||||||||||||||||||||||||||||||||
Sbjct: 799 atgatactcaaattttatatatataataaatttt 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
