Query= MSMg01no541_c02.b1 MSMg01no541_c02.b1 CHROMAT_FILE:
MSMg01no541_c02.b1 PHD_FILE: MSMg01no541_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:39 2005
(672 letters)
>mm_chr4_30441952_30443028
Length = 1077
Score = 1062 bits (549), Expect = 0.0
Identities = 646/699 (92%), Gaps = 34/699 (4%)
Strand = Plus / Plus
Query: 8 gaattcttatacctctacctctcttctaacctgtattttgccctaatgccttctatccct 67
||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct: 179 gaattcttatacctctacctctcttctaacccatattttgtcctattgccttctatccct 238
Query: 68 caatactaggtaggacagaaagaaggatagagggcaaaggggatgtagacttctttagac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 caatactaggtaggacagaaagaaggatagagggcaaaggggatgtagacttctttagac 298
Query: 128 tgcttctttctgatt---------------------------acaatttcagtcttcaga 160
||||||||||||||| ||||||||||||||||||
Sbjct: 299 tgcttctttctgattcatggcaatgagttccttagggtaagtacaatttcagtcttcaga 358
Query: 161 atagctccaatttcttcacatccatttgctcacaaatacttgagaagccacaaccatagt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 359 atagctccaatttcttcacatccatttgctcacaaatacttgagaagccacaatcatagt 418
Query: 221 aatcagaagcagtagatggagtagccgctaccacaggcccccttaggactcttagggtgt 280
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 419 aatcagaagcagtagatggagtagcagctaccataggcccccttaggactcttatggtgt 478
Query: 281 cctttgcagattcgccagaattaaactatctgccactgaccaaatcaggctcctgttagt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cctttgcagattcgccagaattaaactatctgccactgaccaaatcaggctcctgttagt 538
Query: 341 acaggaagtaaatcatagtctttgatccaatactgggattaaaacaaaacgtattcacat 400
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 539 acaggaagtaaatcatagtctttgatccaatattgggatcaaaacaaaacatattcacat 598
Query: 401 c--gtaacttggtttttctaaaaaatccaaattctcacaacacacatctaccatatcttt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 599 aaagtaacttggtttttctaaaaaatccaaattctcacaacacacatctaccatattttt 658
Query: 459 gttatatagtggtcaatggatgggcacttagaaatagtccatttccttgtcattgaatac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gttatatagtggtcaatggatgggcacttagaaatagtccatttccttgtcattgaatac 718
Query: 519 caatggacatggagtagattaattccttcattactggattatgtaaaggttttgtttaat 578
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 719 caatgaacatggagtagattaattccttcattactgggttatgtaaaggttttgttttat 778
Query: 579 actttggtcatatt-----gagatgtttgcaaaatcgcaattgatttctatggaagttat 633
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 779 actttggtcatattattttgagatgtttgcaaaatcacaattgatttcaatggaagttat 838
Query: 634 acaaattaaatttctgactataatcaataaacataattc 672
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 839 acaaattaaatttctgacaataatcaataaacataattc 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1077
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1067
Effective search space: 706354
Effective search space used: 706354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_c02.g1 MSMg01no541_c02.g1 CHROMAT_FILE:
MSMg01no541_c02.g1 PHD_FILE: MSMg01no541_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:40 2005
(599 letters)
>mm_chr4_30624033_30625031
Length = 999
Score = 911 bits (471), Expect = 0.0
Identities = 493/505 (97%), Gaps = 8/505 (1%)
Strand = Plus / Minus
Query: 1 atatttctttagcctggggctacagatttttgagatctctatgtgaacaggcaaagaaga 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 642 atatttctttagcctggggctacagatttttgagatctctatgtgagcaggcaaagaaga 583
Query: 61 tgttactatgccggctgggatgaatgatctcaaacaaccaaagggaatgagtctgctaat 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgttactatgccggctgggacgaatgatctcaaacaaccaaagggaatgagtctgctaat 523
Query: 121 ccacaacagaaggagaaagcatatgtctgggaattcagagagctcttaggaacactcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ccacaacagaaggagaaagcatatgtctgggaattcagagagctcttaggaacactcatt 463
Query: 181 tgctatactgtatctgaagagcaaggtcagcagaatactgaacacaggcaagccttagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgctatactgtatctgaagagcaaggtcagcagaatactgaacacaggcaagccttagtg 403
Query: 241 ggtaacagaggcaggttttctttttattacgttatctatctatctatctatctatctatc 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 402 ggtaacagaggcaggttttctttttattacgt--------tatctatctatctatctatc 351
Query: 301 tatctatctatctatctatctatctatcatctagctatctctcctttctccccaaatgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatctatctatctatctatctatctatcatctagctatctctcctttctccccaaatgag 291
Query: 361 tctaattttccagcccttgatagctagtctggaactcagtatgtagacaggataacctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tctaattttccagcccttgatagctagtctggaactcagtatgtagacaggataacctag 231
Query: 421 aacatgtgataatgtttctgacttggtttctcatatgctaagataagcacatgtgctgcc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 230 aacatgtgataatgtttctgacttggtttctcatatgctaagataagcacatgtgccgcc 171
Query: 481 acaccagcaagaagccaaagataga 505
|||||||||| ||||||||||||||
Sbjct: 170 acaccagcaacaagccaaagataga 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
