NNNNTTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTG
AAGAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTCGTACAACCACTCTGGAAATCAGTGTGGCG
GTTCCTCAGAAAACAGGATTTTAATAAAGACAACATAAATCCCAGCAGTA
CCCAGCTCTCCCTGTGGTTTCAGCAAAGGCATATGGACCCCTTCCCTTCA
TTATAGAGCAGCCTCAAATCCCAATTTCTGGCCCTTCCAACTTTGGCTTT
GCAGATATGAATTCACAACAAAGAGGAAGAGTGTTGCCTGCCATGTGCCA
ATTTACTCCTCACTCACCTACATATATCTTGAGCACTGGAGGTTGTAGGA
TTGAATCTGACTCAGGGTCCAGAGCCACAGGGAACTCGGCATCACAACAC
CAAGACAGAAGACAGACAGAAATGAGCCACAGGGAGCAAGGTAACACCAT
CTTAGCTCAGTGACATCAATGAGTGTTTGTGTCCCTGTCTGGCAATCAGT
GTACCTTGTAGGGACTGAGGTGACCACGCCCCTTCATGCAN

TTTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGAGCTCTGTA
CCCCATCTAAAAATTGGGTTATTTGGAGTTTTTGAGGTTAACTTCTTGAA
TTCTTTATGTATTTTGGGGTAGATGTAGGGGTTACTGATGATTGTTTTTG
CAATCTGTAAGTTGCCAATGTATCCTATTGATGGTGTCTTTTGCCTTACA
GATACTCTTCAGTTTCGAGGAGTTCCATTTATCAAGTGTTGATCTTAGAG
CCTGTGCCTCTGGTGTTCTGTTCATGAAATTTCTGCCTGTTTCAATGAGT
TTGAGGCTCATTCCCACTTTCTCTTCTATTCAATTCAGTGTATCTGGTTT
TATGTTGAAGTCCTTAATCCACTTGCACTTGAGCTTTGTGCAAGATGATA
AATGTGGATCTACTTTCATTCTCCTATATACAGACCACCTGTTACACCAT
CAGCATTTATTAAAGATGTTTTTTTTCCACTGTTTGTTTTTGGGTACTTT
GCCAAAGATTAGGTGTTCATAGGTGCATGAAATTACATCTGTGTCTTCAA
TTCTATTTCATTGGTCGATCTGGCTCCATCTGTACCAATTCCATGAGTTG
GTTTGTTTTGTTTTGTCATTATTGCAGTGTAGTACAGATTGATGTCAGAG
ATGGTTATTCCCAAAGAACTTCTTTTATTGTT

Query= MSMg01no541_g10.b1 MSMg01no541_g10.b1 CHROMAT_FILE:
MSMg01no541_g10.b1 PHD_FILE: MSMg01no541_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:02 2005
         (641 letters)



>mm_chr4_121094887_121095927
          Length = 1041

 Score =  443 bits (229), Expect = e-128
 Identities = 346/389 (88%), Gaps = 16/389 (4%)
 Strand = Plus / Plus

                                                                       
Query: 261 aggattttaataaagacaacat-aaatcccagcagtacccagctctccctgtgg--tttc 317
           |||||||||||||||| ||||| ||| ||||||||||| || || |||||| ||  ||  
Sbjct: 461 aggattttaataaagagaacatgaaa-cccagcagtacacacctttccctgagggctt-- 517

                                                                       
Query: 318 agcaaaggcatatg-gaccccttcccttcattatagagcagcctcaaatcccaatttctg 376
           |||||||  ||||| |  |||||||||||| | ||||||||||||||||||||||| |||
Sbjct: 518 agcaaagaaatatgtg-tcccttcccttcactgtagagcagcctcaaatcccaattcctg 576

                                                                       
Query: 377 gcccttccaactttggctttgcagatatgaattcacaacaaagaggaagagtgttgcctg 436
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 577 gcccttccaactttggctttgcagatatgaatccacaacaaagaggaagagggttgcctg 636

                                                                       
Query: 437 c-catgtgccaatttactcctcactcacc---tacatatatcttgagcactggaggttgt 492
           | | ||||||||| ||||||| |||||||   | ||    |||||||||||||||||| |
Sbjct: 637 ctc-tgtgccaatctactccttactcacctgttgca---gtcttgagcactggaggtttt 692

                                                                       
Query: 493 aggattgaatctgactcagggtccagagccacagggaactcggcatcacaacaccaagac 552
            ||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 693 gggactgattctgactcagggtccagagccacaggcaacttggcatcacaacaccaagac 752

                                                                       
Query: 553 agaagacagacagaaatgagccacagggagcaaggtaacaccatcttagctcagtgacat 612
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaaagacagacagaaaggagccacagggagcaaggtaacaccatcttagctcagtgacat 812

                                        
Query: 613 caatgagtgtttgtgtccctgtctggcaa 641
           ||||||||| ||||||||||| |||||||
Sbjct: 813 caatgagtgcttgtgtccctgactggcaa 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)