Query= MSMg01no541_k24.b1 MSMg01no541_k24.b1 CHROMAT_FILE:
MSMg01no541_k24.b1 PHD_FILE: MSMg01no541_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:26 2005
(602 letters)
>mm_chr4_36468649_36469650
Length = 1002
Score = 1015 bits (525), Expect = 0.0
Identities = 559/579 (96%), Gaps = 14/579 (2%)
Strand = Plus / Minus
Query: 4 ggaattcagtgagaattatcttcaatgtagattaaaaagctaaacagtctgagatagtgt 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 579 ggaattcagtgagaattatcttcaatgtagattaaaaaactaaacagtctgagatagtgt 520
Query: 64 ttcctcatgaactataaacaataggagattagaccttttgtgaagcttggcatcaaatca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttcctcatgaactataaacaataggagattagaccttttgtgaagcttggcatcaaatca 460
Query: 124 ggttgataaaaaatgtcttagaacacgagactatgtagaacacttcaaaccaggtaattc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 459 ggttgataaaaaatgtcttagaacacgagactatgtagaacacttcaaaccaggtaatcc 400
Query: 184 tgtctatacctaaatcaatatcatatagtttagcactatatgattagtaagatgtaatgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtctatacctaaatcaatatcatatagtttagcactatatgattagtaagatgtaatgt 340
Query: 244 ttgaaggacagttctttctatagaggaagagtaagtgaaattaggctacttctgagaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttgaaggacagttctttctatagaggaagagtaagtgaaattaggctacttctgagaata 280
Query: 304 aagatacatattaataattgaaaggtaaaattcataatggagattgttttagatgttctg 363
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 279 aagatacatattaatgattgaaaggtaaaatttataatggagattgttttatatgttctg 220
Query: 364 actaacagtgtcttcctttaaaaatctattaatttttctttaaaaaaataagatgaaatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 actaacagtgtcttcctttaaaaatctattaatttttctttaaaaaaataagatgaaatg 160
Query: 424 aaaaatataacttttaaatcctcaggtatgttcttattttgaattcacatgcatgtgtac 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gaaaatataacttttaaatcctcaggtatgttcttattttgaattcacatgcatgtgtac 100
Query: 484 atatg--------------cacacacacacacacacactagcttactaactataatttac 529
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atatgcacacacacacacacacacacacacacacacactagcttactaactataatttac 40
Query: 530 actaagaaaatattgtaatttatgattttcagagaattt 568
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 actaagaaaatattgtaatttatgattttcagagaattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_k24.g1 MSMg01no541_k24.g1 CHROMAT_FILE:
MSMg01no541_k24.g1 PHD_FILE: MSMg01no541_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:26 2005
(586 letters)
>mm_chr4_36435202_36436188
Length = 987
Score = 1104 bits (571), Expect = 0.0
Identities = 583/587 (99%), Gaps = 1/587 (0%)
Strand = Plus / Plus
Query: 1 tgtacatactcaatagtatgtttaattatattgtccattaagtgagataatggtttcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tgtacatactcaatagtatgtttaattatattgtccattaagtgagataatggattcctc 260
Query: 61 attggtgctcttctctggagatttaaagcattagcaataaattattatttgtgtcattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggtgctcttctctggagatttaaagcattagcaataaattattatttgtgtcattaa 320
Query: 121 tattatctttaaaatacatagcattagaatatactcttaatatgtgactcacaaacacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatctttaaaatacatagcattagaatatactcttaatatgtgactcacaaacacta 380
Query: 181 atgggtatttatgagagaagtgactcagttgttatttgcaactagtagtgaaaagttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgggtatttatgagagaagtgactcagttgttatttgcaactagtagtgaaaagttgca 440
Query: 241 gtgtctttcctcaactcggagtcctctctcttgctctataatgttgtcatgaagatagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtctttcctcaactcggagtcctctctcttgctctataatgttgtcatgaagatagtg 500
Query: 301 agaaatatcagcagtgactgaccgtaatgtctcaagtgctagtctattgttgttttgcta 360
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaatgtcagcagtgactgaccgtgatgtctcaagtgctagtctattgttgttttgcta 560
Query: 361 aagtctaaacaaagagactatttaatgtctggagctaagtagaatattaagagagagaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtctaaacaaagagactatttaatgtctggagctaagtagaatattaagagagagaat 620
Query: 421 caagaatgaggtagaagagacattgaggggataggaaaaaa-gaatgtaatggaatacat 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 caagaatgaggtagaagagacattgaggggataggaaaaaaagaatgtaatggaatacat 680
Query: 480 aaaaaatgaatgcaaaggtggggtctaaatgggggaagaaagggcaccatgataaactct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaaatgaatgcaaaggtggggtctaaatgggggaagaaagggcaccatgataaactct 740
Query: 540 aatactttatttgataaccaaaatagagatgagagtgttttagtggt 586
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatactttatttgataaccaaaatagagatgagagtgttttagtggt 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space: 562752
Effective search space used: 562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
