Query= MSMg01no542_b14.b1 MSMg01no542_b14.b1 CHROMAT_FILE:
MSMg01no542_b14.b1 PHD_FILE: MSMg01no542_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:01 2005
(648 letters)
>mm_chr4_30411237_30412287
Length = 1051
Score = 940 bits (486), Expect = 0.0
Identities = 581/648 (89%), Gaps = 58/648 (8%)
Strand = Plus / Plus
Query: 5 gaattccaggatcatggtaaagatctataatttcaatgcttgggaaataaggcaagagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaggatcatggtaaagatctataatttcaatgcttgggaaataaggcaagagga 266
Query: 65 tccaagtcatcctccacttgatagtgagactgaagccactgtagcctttatgagatcttg 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 tccaagtcatcctccacttgatagtg-gactgaagccactgtagcctttatgagatcttg 325
Query: 125 tccaataaaaaaacagaataggtgtgagatgggtcatccagaatgatggctgctacagag 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccaat-aaaaaacagaataggtgtgagatgggtcatccagaatgatggctgctacagag 384
Query: 185 tggtaacctgtgttctagttctaggacctatatagtggaaagagaacag---acttcaac 241
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 385 tggtaacctgtgttctagttctaggacctatatagtggaaagagaacagactacttcagc 444
Query: 242 ttatctgattcctacatatacaccaaaacatttctacatatactcaataacatctatacc 301
|||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 445 ttatctgatttctacatatacaccaaaacatttctgcatatacttgataacatctatacc 504
Query: 302 cgaacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 361
|| |||||
Sbjct: 505 tga----------------------------------------------------acaca 512
Query: 362 cacacacacacacgatgaatgaatataattgtatagagatcttcaaaagcat-aaaaaat 420
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 513 tacacatacacacgatgaatgaatataattgtatagagatcttcaaaagcataaaaaaat 572
Query: 421 ggaaaatttaatactcattgataatttgacttgagattaatggcatttgaaatactgcag 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggagaatttaatactcattgataatttgacttgagattaatggcatttgaaatactgcag 632
Query: 481 tgtttgggtgtttcctctttgggtttcataagataagacagcaacctgagctttgacaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgtttgggtgtttcctctttgggtttcataagataagacagcaacctgagctttgacaca 692
Query: 541 tcatgtgtttgagaaactatctgaattaaaacctgcaaaatagagtttccaaaatacagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcatgtgtttgagaaactatctgaattaaaacctgcaaaatagagtttccaaaatacagc 752
Query: 601 tttgttaagaaagaaatttgcactgtttattgtctataggcttgtcca 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tttgttaagaaagaaatttgcactgtttattgtctataggcttgtcca 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1051
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1041
Effective search space: 664158
Effective search space used: 664158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_b14.g1 MSMg01no542_b14.g1 CHROMAT_FILE:
MSMg01no542_b14.g1 PHD_FILE: MSMg01no542_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:01 2005
(630 letters)
>mm_chr4_30563344_30564371
Length = 1028
Score = 820 bits (424), Expect = 0.0
Identities = 434/438 (99%), Gaps = 2/438 (0%)
Strand = Plus / Minus
Query: 193 gttgcattatttctctgtttagcttatgtctggatgacctgtcagttggggagagtgtga 252
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1028 gttgcattatttctctgtttagcttatgtctgaatgacctgtcagttggggagagtgtga 969
Query: 253 tgttgaactcccccactatttatgtgtgggtttgatgtatgatttgagctttagcaatgg 312
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 968 tgttgaactcccccactatttatgtgtgggttcgatgtatgatttgagctttagcaatgg 909
Query: 313 tttttcttttcttttcttttttattttacaaatatagttgcccttgtatttgaagcatag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tttttcttttcttttcttttttattttacaaatatagttgcccttgtatttgaagcatag 849
Query: 373 atatttaataatattatttttatttttttacacaaatcataattatatattcaaaccatc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 atatttaataatattatttttatttttttacacaaatcataattatatattcaaaccatc 789
Query: 433 atgttatatatgggaatttggtcaaggatataaatagtgtcattatctggtattatgtat 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 atgttatatatgggaatttggtcaaggatataaatagtgtcattatctggtattatgtat 729
Query: 493 actaaagtacaaattggatggagaatatttagatcagctacataaaaggcacatgtatca 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 actaaagtacaaattggatggagaatatttagatcagctacataaaaggcacatgtatca 669
Query: 553 gataccagacaaaaggatttttttttagaaaaccagatacacatttttgtaacagttcta 612
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gataccagacaaaagga--tttttttagaaaaccagatacacatttttgtaacagttcta 611
Query: 613 cagtctgtaaatataaga 630
||||||||||||||||||
Sbjct: 610 cagtctgtaaatataaga 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1028
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1018
Effective search space: 631160
Effective search space used: 631160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
