Query= MSMg01no542_h02.b1 MSMg01no542_h02.b1 CHROMAT_FILE:
MSMg01no542_h02.b1 PHD_FILE: MSMg01no542_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:29 2005
(659 letters)
>mm_chr4_91792939_91793996
Length = 1058
Score = 1208 bits (625), Expect = 0.0
Identities = 647/655 (98%), Gaps = 4/655 (0%)
Strand = Plus / Plus
Query: 5 gaattccatccttttggaatcagatgcatgttggttttaccattgattccaccttacttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatccttttggaatcagatgcatgttggttttaccattgattccaccttacttg 264
Query: 65 ctctggaatgggatcttcagttataagcctcactcttctcattatgtggagaagctgttc 124
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ctctggaatgggatcttcagctataagcctcact-ttctcattatgtggagaagctgttc 323
Query: 125 agcgtgttctttgtttgtttttgtttgttggtgttggttttcttttgttgttgtgtttgt 184
|||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 324 agcgtgatctttgtttgtttttgtttgttg--gtt-gttttcttttgttgttgggtttgt 380
Query: 185 ttgctttaatctcacattacacatttctctttgtaggaaaactaaaacattgctaatata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttaatctcacattacacatttctctttgtaggaaaactaaaacattgctaatata 440
Query: 245 tgttagaataaagaaatcctattgaattttttaagggataaataatgttaaatagaactg 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tgttagaataaagaaatcctattgaattttttgagggataaataatgttaaatagaactg 500
Query: 305 ctatggttcacgttggttctcactgttgatcacatctgtaagattaccaatgagatccta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatggttcacgttggttctcactgttgatcacatctgtaagattaccaatgagatccta 560
Query: 365 gtatagcaattatttgtatctagaattcatgttttcataaagctgctattatttaaaagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatagcaattatttgtatctagaattcatgttttcataaagctgctattatttaaaagt 620
Query: 425 atttttgctaagttttattttaaaactaatatgatatccaccctttatataaaatatcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttttgctaagttttattttaaaactaatatgatatccaccctttatataaaatatcag 680
Query: 485 gaggaatacacaagtaatattaaatataattaagatagtaaaatcaagtagaaaaattaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggaatacacaagtaatattaaatataattaagatagtaaaatcaagtagaaaaattaa 740
Query: 545 agttctctgatggtaaggacaatgacagatacctattgacttattgcaaagcaagcaata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttctctgatggtaaggacaatgacagatacctattgacttattgcaaagcaagcaata 800
Query: 605 tactagaattatcatttttccaacagttacggttaattcaaaacacaaagctctc 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tactagaattatcatttttccaacagttacggttaattcaaaacacaaagctctc 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_h02.g1 MSMg01no542_h02.g1 CHROMAT_FILE:
MSMg01no542_h02.g1 PHD_FILE: MSMg01no542_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:29 2005
(676 letters)
>mm_chr4_91982451_91983526
Length = 1076
Score = 1064 bits (550), Expect = 0.0
Identities = 568/574 (98%), Gaps = 1/574 (0%)
Strand = Plus / Minus
Query: 100 aatggagagactactgtaggaattctaacctttcttccttttgaagcactgcatagccca 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 aatggagagactactgtaggaattctaacctttcttccttttgaagcactgcatagccca 1017
Query: 160 ttgtgtttcatctatttctttatctgtagcttaaaaaatgtgattcatgtaagctctata 219
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 1016 ttgtgtttcatctatttctttatctgtagctt-aaaaatgtgattcatgtaagctctaca 958
Query: 220 taacaatatctttatttactttgttcacaataacatcattacctctttactatgactgat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 taacaatatctttatttactttgttcacaataacatcattacctctttactatgactgat 898
Query: 280 agaaacaaaacaaaacaaaacaaacaaacaaacaaaaaactgttgtaatcttttttacct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 agaaacaaaacaaaacaaaacaaacaaacaaacaaaaaactgttgtaatcttttttacct 838
Query: 340 cctcttctatgatgtatcctgaaacttcgatgtaggatagctttatacatattctcagcg 399
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 837 cctcttctatgacgtatcctgaaacttcgttgtaggatagcgttatacatattctcagcg 778
Query: 400 tgggaactctgttctgtggtccatttttctcttcttagtcttcagttactggtctctgta 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tgggaactctgttctgtggtccatttttctcttcttagtcttcagttactggtctctgta 718
Query: 460 gtaggctcaatctgctgtaaaaagaaacctgtttaatgaggagtgacaactacaatctta 519
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gtagactcaatctgctgtaaaaagaaacctgtttaatgaggagtgacaactacaatctta 658
Query: 520 tgtgtatataggaatatatatttagaactcttttggaaatcatacagttttaagaaagtg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgtgtatataggaatatatatttagaactcttttggaaatcatacagttttaagaaagtg 598
Query: 580 agagttgtaagccttcttctaggagccatacctgactaagtgtaagtacttgtctaggtt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agagttgtaagccttcttctaggagccatacctgactaagtgtaagtacttgtctaggtt 538
Query: 640 taaagttccagacatgaattttctagtatttggt 673
||||||||||||||||||||||||||||||||||
Sbjct: 537 taaagttccagacatgaattttctagtatttggt 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
