Query= MSMg01no542_h17.b1 MSMg01no542_h17.b1 CHROMAT_FILE:
MSMg01no542_h17.b1 PHD_FILE: MSMg01no542_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:32 2005
(703 letters)
>mm_chr4_12697792_12698894
Length = 1103
Score = 1110 bits (574), Expect = 0.0
Identities = 583/586 (99%)
Strand = Plus / Minus
Query: 118 agaggagttctttcagtatgacaaggtcattgggatggagttcttgtgaaggatatcaca 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 agaggagttctttcagtatgacaaggtcattgggatggagttcttgtgaaggatatcaca 1044
Query: 178 cccttgtaaaagaaggctgggggagcttgtcagcccttctaagcttcctgtatgtgtggt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 cccttgtaaaagaaggctgggggagcttgtcagcccttctaagcttcctgtatgtgtggt 984
Query: 238 tgcaacaagaggcatcattgaggaaacaatgtagaagttcttcctagactttcagtctac 297
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 983 tgcaacaagaggcatcattgaggaaacaatgtaaaagttcttcctagactttcagtctac 924
Query: 298 tgctattctcatcttagactcatttcctactctcaagaatgctcacatgtttttctagta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tgctattctcatcttagactcatttcctactctcaagaatgctcacatgtttttctagta 864
Query: 358 ccttaagataccgaaaacggactcatacacacaagcttctaaaacacatgatccacacat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ccttaagataccgaaaacggactcatacacacaagcttctaaaacacatgatccacacat 804
Query: 418 tgatccacaaattataaacatcaattttctactttgttcttagtgtaacccacaaatcct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgatccacaaattataaacatcaattttctactttgttcttagtgtaacccacaaatcct 744
Query: 478 ttaaccacaagttgattccaagtactattgttctgttgctacgtgtgtatggttatctat 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 743 ttaaccacaagttgattccaagtactattgttctgttgctacatgtgtatggttatctat 684
Query: 538 atttaaagatataattatgtgtcagtagcaactatagtctctttggttctgattctaaaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atttaaagatataattatgtgtcagtagcaactatagtctctttggttctgattctaaaa 624
Query: 598 tcactgacaagaattttattagctgtacagcacagaagtacaaatatgactcctgaagtt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcactgacaagaattttattagctgtacagcacagaagtacaaatatgactcctgaagtt 564
Query: 658 atcagatgtgtaaataatatacacatttaaggactgaagggtatca 703
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 atcagatgtgtaaataatatacacatttaaggactgaagagtatca 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_h17.g1 MSMg01no542_h17.g1 CHROMAT_FILE:
MSMg01no542_h17.g1 PHD_FILE: MSMg01no542_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:32 2005
(661 letters)
>mm_chr4_12562768_12563829
Length = 1062
Score = 1212 bits (627), Expect = 0.0
Identities = 657/673 (97%), Gaps = 13/673 (1%)
Strand = Plus / Plus
Query: 1 taatgcctcttcttattaacttagttaatgagataatttgtaaatgagaaaataattcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 taatgcctcttcttattaacttagttaatgagataatttgtaaatgagaaaataattcaa 250
Query: 61 aactcatgttaaactgaaatgactttagttgtttttctttcctgtcaaattatatataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aactcatgttaaactgaaatgactttagttgtttttctttcctgtcaaattatatataat 310
Query: 121 ttgttcttccagaactataaatagctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttgttcttccagaactataaatagctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 370
Query: 180 ---------ttatatgaagctaatttttt-aggagataaacagaatcccccttctccttg 229
||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 371 tgtgtgtgtttatatgaagctattttttttaggagataaacagaatcccccttctccttg 430
Query: 230 ggagtataaatagctaatgcttagatataagcaaatttataatcagaatttttagtattt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggagtataaatagctaatgcttagatataagcaaatttataatcagaatttttagtattt 490
Query: 290 aaaaaataatacagcaaacccagtgctataaacagttaaggccaacccttttcagtgtgc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaaaaataatacagcaaacccagtgctataaacagttaaggccaacccttttcagtgtgc 550
Query: 350 acagcttcctgtgtcccaatggagtgacatagcagctgctggctcccaccaggtttaaat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acagcttcctgtgtcccaatggagtgacatagcagctgctggctcccaccaggtttaaat 610
Query: 410 catagaaatttagtttcttttgacatggcagtaacaaggacagtccctcttgctgttgtg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 catagaaatttagtttcttttgacatggcagtaacaaggacagtccctcttgctgttgtg 670
Query: 470 gtgttgtcataggtgattgattcacccaaatttcttcttcatgaagtgtgagttacccac 529
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtgttgtcatgggtgattgattcacccaaatttcttcttcatgaagtgtgagttacccac 730
Query: 530 tgagaaatttaccaggcacttagaaaatgcttttgctaaagagcaaacagtgactccttc 589
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgtgaaatttaccaggcacttagaaaatgcttttgctaaagagcaaacagtgactccttc 790
Query: 590 cttgaacgcatggggtacctaaaggcagccagcatctcagccttc-gctttggtttcttt 648
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 791 cttgaacgcatggggtacctaaaggcagccagcatctcagcct-cagctttggtttcttt 849
Query: 649 cctttggctcaga 661
|||||||||||||
Sbjct: 850 cctttggctcaga 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space: 684852
Effective search space used: 684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
