Query= MSMg01no542_l03.b1 MSMg01no542_l03.b1 CHROMAT_FILE:
MSMg01no542_l03.b1 PHD_FILE: MSMg01no542_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:49 2005
(657 letters)
>mm_chr4_77934434_77935491
Length = 1058
Score = 1226 bits (634), Expect = 0.0
Identities = 649/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgttttcaacaaagacatcatcctatatttgaacattcaggatgtttcctta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattctttgttttcaacaaagacatcatcctatatttgaacattcaggatgtttcctta 799
Query: 65 ctatgg-actacctacctccaagctttgctacacatcatatgcaagcatactgtggtctt 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctatggaactacctacctccaagctttgctacacatcatatgcaagcatactgtggtctt 739
Query: 124 gaaagcttaatcttaaacttcttctcaaaccaaatacttcacaaaatacaatagtccatt 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 738 gaaagcttaatcttaaacttcttctcaaaccaaatacttcacaaaatacagtagtccatt 679
Query: 184 ttcattgctggaatcacccttaaatgacacgtgtcctttctctactttaagcctagtgta 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tccattgctggaatcacccttaaatgacacgtgtcctttctctactttaagcctagtgta 619
Query: 244 ggaaggacttcatctataattagattcattttaagcacgtatattgtgtatggattttag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggaaggacttcatctataattagattcattttaagcacgtatattgtgtatggattttag 559
Query: 304 acacaatgcatgtgcaaaattaagtaaataatgcttgcaaaaggaaaagggaatctctaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acacaatgcatgtgcaaaattaagtaaataatgcttgcaaaaggaaaagggaatctctaa 499
Query: 364 tataacttaaacagcccccagaatagttgttttggcattctgaagccaggaatgagattc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tataacttaaacagcccccagaatagttgttttggcattctgaagccaggaatgagattc 439
Query: 424 gcagatggcctcctcgaagactggaatcaagtcatagatgacctctgaacagctgctttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcagatggcctcctcgaagactggaatcaagtcatagatgacctctgaacagctgctttc 379
Query: 484 cttagggagcaggatgaatgaacaagtagatgtggactcctgaagagagctaaagggctc 543
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 cttagggagcaggatgaatgaacaagtagatatggactcctgaagagagctaaagggctc 319
Query: 544 agcccagcaggaggaagaatgaggacctcatgcataagggaaattcttggaagatcatca 603
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 318 agcccagcaggaggaagaatgaggacctcatgcataagggaagttcttggaagatcatca 259
Query: 604 cagaatctcctatacactacagtggagttagtcatccttcctacatcccagagt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagaatctcctatacactacagtggagttagtcatccttcctacatcccagagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_l03.g1 MSMg01no542_l03.g1 CHROMAT_FILE:
MSMg01no542_l03.g1 PHD_FILE: MSMg01no542_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:49 2005
(633 letters)
>mm_chr4_77741612_77742644
Length = 1033
Score = 1185 bits (613), Expect = 0.0
Identities = 630/639 (98%), Gaps = 6/639 (0%)
Strand = Plus / Plus
Query: 1 ctaatgaatgcatttctccttttgtgtacatacaaacaggacttaaaatacatgtttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctaatgaatgcatttctccttttgtgtacatacaaacaggacttaaaatacatgtttaat 254
Query: 61 agtgacataaatatttgctaggatgaacaggttgaatcgacaatacaacaaatgcattcc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtgacataaagatttgctaggatgaacaggttgaatcgacaatacaacaaatgcattcc 314
Query: 121 tcgttggttctaaattagagacttttagagataacttgtaagttcattatattaacttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcgttggttctaaattagagacttttagagataacttgtaagttcattatattaacttgt 374
Query: 181 gtgtgtttctgtatgtgtgtgtgtgtatgtgtctgtgtgtctttgtgtgtctgtgtctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgtgtttctgtatgtgtgtgtgtgtatgtgtctgtgtgtctttgtgtgtctgtgtctgt 434
Query: 241 gt------gtgtgttaattctacaactactttggattagactgaaaattcatataggcac 294
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtctgtgtgtgtgttaattctacaactactttggattagactgaaaattcatataggcac 494
Query: 295 ttgaattcggtaacttcaaattgatatctttccctctatcccaataaataatatattctg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgaattcggtaacttcaaattgatatctttccctctatcccaataaataatatattctg 554
Query: 355 gaaaataatttaaaagtttttactggttacttgatgatttattcagtttgggtattgata 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaaaataatttaaaagtttttactggttacttgatgatttattcagtttgggtattgata 614
Query: 415 caaagaaaaatatgaattgtataaactctgacaaaggctcgatatctttcaaacactaga 474
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 615 caaagaaaaatatgaattgtataaactctgacaaaggctcaatatctttcaaacactaga 674
Query: 475 cttataaatgatttgaagaatatgacatacttttttacatgtggtcacacagattggtga 534
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 675 cttataaatgatttgaagaatatggcatacttttttacatgtggtcacacagattggtga 734
Query: 535 agtcatttatatttactaattagatccaaaggagaaaaaattatgatagataatttaagt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agtcatttatatttactaattagatccaaaggagaaaaaattatgatagataatttaagt 794
Query: 595 accacttatatgacaatcatccatttgtaatttgtgtat 633
|||||||||||||||||||||||||||||||||||||||
Sbjct: 795 accacttatatgacaatcatccatttgtaatttgtgtat 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
