Query= MSMg01no542_n13.b1 MSMg01no542_n13.b1 CHROMAT_FILE:
MSMg01no542_n13.b1 PHD_FILE: MSMg01no542_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:00 2005
(351 letters)
>mm_chr4_125251079_125251827
Length = 749
Score = 632 bits (327), Expect = 0.0
Identities = 342/347 (98%), Gaps = 2/347 (0%)
Strand = Plus / Plus
Query: 5 gaattcacacttcagtggaaatgtgtttcaaacaattagcaggtctttaccgcaggagtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacttcagtggaaatgtgtttcaaacaattagcaggtctttaccgcaggagtc 264
Query: 65 tttgaagttggagcccagacccatctctctgaagggtttccctagaactgacaggctggc 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgaagtcggagcccagacccatctctctgaagggtttccctagaactgacaggctggc 324
Query: 125 agacgctgacacagctcggcctttgctggagtgccaagggctcccatctctgggctggca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agacgctgacacagctcggcctttgctggagtgccaagggctcccatctctgggctggca 384
Query: 185 ccttaggtttcaaatgagtccctccagcagccccagtgtggtcctccattgctgtgtgat 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 ccttaggtttcaaatgagtccctccagcggccccagtgtggtcctccattgctgtgtgat 444
Query: 245 acagagggatctgcatcgctgagacccgaggtcctgtaggggagccagccttctgggcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagagggatctgcatcgctgagacccgaggtcctgtaggggagccagccttctgggcag 504
Query: 305 cctataccaagaccacaggatttccctgttttccaaacctaaaccct 351
||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct: 505 cctataccaagaccacaggatttcc-tggtttccaaacctaa-ccct 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 749
Length adjustment: 9
Effective length of query: 342
Effective length of database: 740
Effective search space: 253080
Effective search space used: 253080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_n13.g1 MSMg01no542_n13.g1 CHROMAT_FILE:
MSMg01no542_n13.g1 PHD_FILE: MSMg01no542_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:01 2005
(146 letters)
>mm_chr4_125431673_125432216
Length = 544
Score = 209 bits (108), Expect = 6e-59
Identities = 136/146 (93%), Gaps = 2/146 (1%)
Strand = Plus / Minus
Query: 1 cacttcagaagaccagtcacaggggcttctctgtcgcacagcctgagacccccaagaaca 60
||||||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||
Sbjct: 344 cacttcagaagaccagtcaaagggttttctctgtcgcacagcctcagaccctcaagaaca 285
Query: 61 ggcagtaggacaggatgtctagctcccccaacccagcatcctaccggccttctctcactt 120
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 ggcagtaggaaaggatgtccagctccctcaacccagcatcctaccggccttctctcactt 225
Query: 121 cttcccccttgttcnntccaatccag 146
|||||||||||||| ||||||||||
Sbjct: 224 cttcccccttgttc--tccaatccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 544
Length adjustment: 8
Effective length of query: 138
Effective length of database: 536
Effective search space: 73968
Effective search space used: 73968
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
