CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCCCCTAACTGGGCTACCTTGTCTAGCCTCAAGAGCAGATGCAA
CCTAGTCCTTCTACAGATTGATATGTCAAAGCTGGTGATATCCAGGGGAG
GCCTCCTTCTTTAAGGAGAAAGGAGCAGTGGGGATAGAGGGAAAAGAAAG
TGTGAGGGAGGCAGTGGGAGGGAAGAAGGGAAGAGAAGTTTCCATGAGGA
TATAAAGTTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATAA
AAATATTTATCAGCCATTTGTATTTACTCTCTTGAGAACTCTGTTTATTA
TCATATCAAAAATTTTAATTGAGGTTCTTGTTTTCTTATTCAGTTTTTTA
GTTTTTTTTTTCTCTAGACTCATCAGTGAACATATAGTTCTTAGCGTTTC
TATTGCCATGATAAACAAACACTATGACAAAAAAAGTATCTTGTGGAGAA
AAGGTTTTATTTTGGTTGCAGTTTCACAATATGGGTTATAAGGGAAAGTA
AGTCAGGGGAAAAACTCAAGGCAGGAATTTAGAGGCAGGGACGTAGAGGG
ATACTGCTTATTTGCTTTTCCCCTGAGAACTGATCAGCCTGCTTTCACTA
TGTAGGACCACAAACTCAAGGACAGCACTATCAGAGTGAGCTGAGACCTC
CCACATCCAATATCACTAAAGAAAATTCACCACAGGATTGTTGATGGGCC
AGTCTGGTGGGAGAATTTTCTTTTCTGA

CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAACCCCCCACCGGTCCACACCTCTG
TGGCCCTGCCCCTTAGAAGCAGCACTCAGGAGCTCTTGTTTTTGAGACTG
TTCTTCCTGCATTCAGATTCCGTGTCAGCAGGGGATGGAAGAAGCAATTT
TCAGATTCCATGGTGGGCTGGATTAAATTACTCCACAGGCCCAGTGTCTC
ACAGACCTACTAGAGTGGATTAAGTGTTTGCTTCCTTTTTGCATTTGAAT
ATTTTTTTCATAAAAGAAAGAAAATGTTAATACAGACCTAGTAGGGGAGA
AAAAGACAGACAAACAAATTGAGTCAGCAAAGAAGCACCCTCCCTATTTC
CTCCTGGTGCACGGCAGCCAAGACTAGTTATATTTGGCCACAACAGGTTG
AAGCTAACCTTTCTGTCTGGATTTAAGTAGCTACTAATATGTGTTGCATA
AAGAACCAAGAGCAATCATTAGGCATTTGATTTGCTCTTAATTCTGTTAC
TTCATCATTACTTTTCAGTGATGACTTAAATTGTGGAAACATAAAAACAA
AACTCCAATGTATTTGAATTTGGATTTGGAAGAAAAATATTATTAGTAGT
TTAATAGTCAGGGGTTATTATCTTTTAATCGAGTGAATTATTACACGGCA
TTTAATAATTGGAGTGTTTAGTTTTCTATGTTAATTAGTGAGTGATACCA
TCTATGTCATGCTGAACTTCTGN

Query= MSMg01no542_p05.g1 MSMg01no542_p05.g1 CHROMAT_FILE:
MSMg01no542_p05.g1 PHD_FILE: MSMg01no542_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:09 2005
         (664 letters)



>mm_chr4_90274986_90276049
          Length = 1064

 Score = 1253 bits (648), Expect = 0.0
 Identities = 660/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaccccccaccggtccacacctctgtggccctgccccttagaagcagcactcaggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ataaccccccaccggtccacacctctgtggccctgccccttagaagcagcactcaggagc 805

                                                                       
Query: 61  tcttgtttttgagactgttcttcctgcattcagattccgtgtcagcaggggatggaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcttgtttttgagactgttcttcctgcattcagattccgtgtcagcaggggatggaagaa 745

                                                                       
Query: 121 gcaattttcagattccatggtgggctggattaaattactccacaggcccagtgtctcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcaattttcagattccatggtgggctggattaaattactccacaggcccagtgtctcaca 685

                                                                       
Query: 181 gacctactagagtggattaagtgtttgcttcctttttgcatttgaatatttttttcataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gacctactagagtggattaagtgtttgcttcctttttgcatttgaatatttttttcataa 625

                                                                       
Query: 241 aagaaagaaaatgttaatacagacctagtaggggagaaaaagacagacaaacaaattgag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 aagaaagaaaatgttaatacagacctagtaggggagaaaaagacagacaaacaaattggg 565

                                                                       
Query: 301 tcagcaaagaagcaccctccctatttcctcctggtgcacggcagccaagactagttatat 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 564 tcagcaaagaagcaccctccctatttcctcctggtgtacggcagccaagactagttatat 505

                                                                       
Query: 361 ttggccacaacaggttgaagctaacctttctgtctggatttaagtagctactaatatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggccacaacaggttgaagctaacctttctgtctggatttaagtagctactaatatgtg 445

                                                                       
Query: 421 ttgcataaagaaccaagagcaatcattaggcatttgatttgctcttaattctgttacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgcataaagaaccaagagcaatcattaggcatttgatttgctcttaattctgttacttc 385

                                                                       
Query: 481 atcattacttttcagtgatgacttaaattgtggaaacataaaaacaaaactccaatgtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcattacttttcagtgatgacttaaattgtggaaacataaaaacaaaactccaatgtat 325

                                                                       
Query: 541 ttgaatttggatttggaagaaaaatattattagtagtttaatagtcaggggttattatct 600
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 ttgaatttggatttggaagaaaaatattgttagtagtttaatagtcaggggttattatct 265

                                                                       
Query: 601 tttaatcgagtgaattattacacggcatttaataattggagtgtttagttttctatgtta 660
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaatcgagtgaattattacatggcatttaataattggagtgtttagttttctatgtta 205

               
Query: 661 atta 664
           ||||
Sbjct: 204 atta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)