CCCGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACAAGTGACTACAAAATATCTACCTAGGGTTACGTTCCCT
ATGGAAATTACATGGACACTGTAGGCACTCTGGGCAGCGTGGTTTGTCGG
AACCTATTTACCTTTCCTACCTGTGCCTTGTTTTCCTTCTTACCCAGTTC
CTCCTGGTGTCAATATATAAGGCTGTTATAATCGGATAACTTGCTTTTAC
TAGCCTGGGGATGAACTTCTGAGTTGAGCCAACCTGTAGGCAAACCCTCT
CAAGAATTCTAGTCTTCTGCAGTATGGAAGAGACTAGCAGGATTTATATA
CTCCATCATAACCAAGAATCGTTTCCCTCAGATAAAAGCCGCCTGTGCCG
CTATTCATTTCCAAGATTGTGCTTCTGCCTTACCATCACTCTTGTTTGTT
TGTTTGCTTGCTTGTTTGTTTTGACAAAATCCCATGTGTGACAAACTTAC
TTCATGCAAAATTTAAAAATTATATGCACAGGAAACAAGTTAATTTTCTC
TATGAATGGCTTTTCTGTCGCAGTGATGAAACACTAAAACTAAGACAACT
TGTACAAGAAAAGGTGTATTTGGGCTTACAGTCCCAGAGGTTATGGTCCA
TAGTGCAGGGAAAAGGCATGGCAGTAGGTAGTATGGCAGCTGAAGCAGGA
TAACGAGAGCCATGTCTCCCTGGNCAGCAGAAGACAGAGAACGAACTGTG
AATGGC

NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCTGAGGATCCACG
CACAGGACCACACAGGTTTAAGTCAGATGGGGTCCCAGTGCTGAGAAAGA
GAAGTGGGCATGGACCCACCCCACTTCTAACCAAAAGCTATCTGCAATTG
ACCCCTGTTTGCAAAGGAAAAGATGGTTTCTCCAATGGAGTCTCACTGGG
TATACTAATCACTCTTCAATGTACAACTCATGCCCAAGCGTAGCTGGCTA
ACACAAAGTGAAAACAGGTGTTTATGTCTCAAATTGCTTTGTCTGGACAT
TTTCTTTTCTTTTCTTTTCTTATCATTTTTTCTAGTATATTTTGGTTTCT
GTTTTNNTGTGGTGTGTGTGTGNNNNNNNNNNNNTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
NNNNNNNNTNNNNNNNNNNTNNTNNNNNTTNTNTTNTNTTNTTTTTTNTT
TTTTTTTTTTNNTTTTTTTTTTTTTTTTTNTTTTTNNTTTTTTTTTTTTT
TTNTTTTTNTTTTTNTTTTTTTTTTTTTTTTNTTTNTNTTTNTTTTTTNT
TTTTTTTTTTTTTTTTNTTTTTNTTTNNTNTTTTNTNTTTTTTTNTTTTT
TNTTTTTTTTTNNTTTTNNNTTNTTTTTTNTTTTTTTTTTTTNNTTNNNT
TTTTTTNTNTTTTTTTTTTTNTTTNTTTTTTTT

Query= MSMg01no543_c24.b1 MSMg01no543_c24.b1 CHROMAT_FILE:
MSMg01no543_c24.b1 PHD_FILE: MSMg01no543_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:28 2005
         (675 letters)



>mm_chr4_95218203_95219277
          Length = 1075

 Score = 1060 bits (548), Expect = 0.0
 Identities = 583/598 (97%), Gaps = 6/598 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacaagtgactacaaaatatctacctagggttacgttccctatggaaattacat 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 592 gaattcaacaagtgactacaaaatatctacctagtgttacgttccctatggaaattacat 533

                                                                       
Query: 65  ggacactgtaggcactctgggcagcgtggtttgtcggaacctatttacctttcctacctg 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggacactgtaggcactctgggcaacgtggtttgtcggaacctatttacctttcctacctg 473

                                                                       
Query: 125 tgccttgttttccttcttacccagttcctcctggtgtcaatatataaggctgttataatc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 472 tgccttgttttccttcttacccagttcctcctggtgtcaatatataaggctgttgtaatc 413

                                                                       
Query: 185 ggataacttgcttttactagcctggggatgaacttctgagttgagccaacctgtaggcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 412 ggataacttgcttttactagcctggggatgaacttctgagttgagccaatctgtaggcaa 353

                                                                       
Query: 245 accctctcaagaattctagtcttctgcagtatggaagagactagcaggatttatatactc 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 accctctcaagaattctactcttctgcagtatggaagagactagcaggatttatatactc 293

                                                                       
Query: 305 catcataaccaagaatcgtttccctcagataaaagccgcctgtgccgctattcatttcca 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 292 catcataaccaagaatcgtttccctcagataaaagccgcctgtgccgctatttatttcca 233

                                                                       
Query: 365 agattgtgcttctgccttaccatcactcttgtttgtttgtttgcttgcttgtttgttttg 424
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 agattgtgcttctgcctttccatcactcttgtttgtttgtttgcttgcttgtttgttttg 173

                                                                       
Query: 425 acaaaatcccatgtgtgacaaacttacttcatgcaaaatttaaaaattatatgcacagga 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acaaaatcccatgtatgacaaacttacttcatgcaaaatttaaaaattatatgcacagga 113

                                                                       
Query: 485 aacaagttaattttctctatgaatggcttttctgtcgcagtgatgaaacactaaaactaa 544
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
Sbjct: 112 aacaagttaattttctctatgaatgacttttctgtcgcagtgatgaaacactaaa----- 58

                                                                     
Query: 545 gacaacttgtacaagaaaaggtgtatttgggcttacagtcccagaggttatggtccat 602
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  -acaacttgtacaagaaaaggtgtatttgggcttacagtcccagaggttatggtccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)