Query= MSMg01no543_k16.b1 MSMg01no543_k16.b1 CHROMAT_FILE:
MSMg01no543_k16.b1 PHD_FILE: MSMg01no543_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:06 2005
(705 letters)
>mm_chr4_72509392_72510497
Length = 1106
Score = 1330 bits (688), Expect = 0.0
Identities = 699/703 (99%), Gaps = 1/703 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgaaactctgtgtctaaaatccaaagcttataaataagaagaaaaattgaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ggaattcttgaaactctgtgtctaaaatccaaagcttataaataagaagaaaaattgaga 847
Query: 64 gaactatttcctatgtgccaatagctaagaaatgggagttcaaaagaaggtataaaggaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gaactatttcctatgtgccaatagctaagaaatgggagttcaaaagaaggtataaaggaa 787
Query: 124 tgat-catacaaattaccaaacaatttgttctaggtaatgctcataactaaaggctattc 182
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgatccatacaaattaccaaacaatttgttctaggtaatgctcataactaaaggctattc 727
Query: 183 ttcaacatagtgaatttatgtagtgtcatgaaaataatttcagaccaagagatatcactt 242
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttcaatatagtgaatttatgtagtgtcatgaaaataatttcagaccaagagatatcactt 667
Query: 243 aaaattattagaatatggagttaaagagcagagtcaaataaaattcaagtttaaaaagaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaaattattagaatatggagttaaagagcagagtcaaataaaattcaagtttaaaaagaa 607
Query: 303 aaagtgaaatacaagaagaaaatatctggccagctttagctattacatttacattattgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaagtgaaatacaagaagaaaatatctggccagctttagctattacatttacattattgt 547
Query: 363 tcatacctggaaataagtaatatcattattatgaaaaattaaacagcataaataagaatc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcatacctggaaataagtaatatcattattatgaaaaattaaacagcataaataagaatc 487
Query: 423 cacaaaatttttctatattactgatgtataaattttgagatactataatttttattagta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cacaaaatttttctatattactgatgtataaattttgagatactataatttttattagta 427
Query: 483 tatacgactaagtaaattagtagctattctaatagctatattctattaatggtcattcag 542
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tatatgactaagtaaattagtagctattctaatagctatattctattaatggtcattcag 367
Query: 543 atatatggtgtttctcctggaagtaaatgtctgcttaagcctacccgtcaatttttcccc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atatatggtgtttctcctggaagtaaatgtctgcttaagcctacccgtcaatttttcccc 307
Query: 603 aagaccaccttcttataaaagtttttcattaatttgcaatanatataacatttgagcata 662
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 306 aagaccaccttcttataaaagtttttcattaatttgcaataaatataacatttgagcata 247
Query: 663 atattctagaagtaaatgataatattcctgactaaacacaaga 705
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atattctagaagtaaatgataatattcctgactaaacacaaga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space: 761720
Effective search space used: 761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_k16.g1 MSMg01no543_k16.g1 CHROMAT_FILE:
MSMg01no543_k16.g1 PHD_FILE: MSMg01no543_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:06 2005
(670 letters)
>mm_chr4_72384420_72385488
Length = 1069
Score = 1170 bits (605), Expect = 0.0
Identities = 656/677 (96%), Gaps = 11/677 (1%)
Strand = Plus / Plus
Query: 1 tatgtttctgagggtggcttaaagcataggtagggtgatcaagaattagactttaatgac 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tatgtttctgagggtggcttaaagcataggtagggtgatcaagaattacactttaatgac 260
Query: 61 attgtcaattagtgatagaagttaagaaaaccccagtcctcaaagaaaggccaggctttc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtcaattagtgatagaagttaagaaaaccccagtcctcaaagaaaggccaggcttta 320
Query: 121 tgagttcccttctgcttttat-ttcgatttctcacttttgcgctttctgttaagtatgga 179
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tgagttcccttctgc-tttatagtcgatttttcacttttgcgctttctgttaagtatgga 379
Query: 180 tttcaattgaaaaaaataatgaaatatatcaaaatagcagtaatccttaactgtagattg 239
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttaattg-aaaaaatactgaaatatatcaaaatagcagtaatccttaactgtagattg 438
Query: 240 tagatatatactccattttgtgtttctaataatgtatttataatattttatgataatcat 299
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 439 tagatatatactccattttgtgattctaataatgtacttataatattttatgataatcat 498
Query: 300 gtgtaattttttcataactatcatttgagttatattattgtgatatccattctattgtga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgtaattttttcataactatcatttgagttatattattgtgatatccattctattgtga 558
Query: 360 tatctagatttgtcactcttgaccaactagtacaaagactacctctacttcattgactta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tatctagatttgtcactcttgaccaactagtacaaagactacctctacttcattgactta 618
Query: 420 ccaggaactagttgacaaacttaggttttatgtgtagtgaagtcatgttgtgtttctgtg 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccaggaactagatgacaaacttaggttttatgtgtagtgaagtcatgttgtgtttctgtg 678
Query: 480 tttagccttcagtttccatcatcacaatgaattgtaccttgaaaaattcactgaatccca 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttagccttcagtttccatcatcgcaatgaattgtaccttgaaaaattcactgaatccca 738
Query: 540 gaaagtgcaaaagtgaaagatccactataaagcagtctctttattcatgtaattacaata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaagtgcaaaagtgaaagatccactataaagcagtctctttattcatgtaattacaata 798
Query: 600 ttttctaacatgcttatgtacacacacacacacacacacacaca------tttatatata 653
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 799 ttttctaacatgcttatgtacacacacacacacacacacacacacacacatttatatata 858
Query: 654 tatataaacatacacac 670
|||| |||||||||||
Sbjct: 859 tata--aacatacacac 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
