BAC Information

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BAC

Clone NameMSMg01-543P01
Chromosome4 (Build37)
Map Location 99,426,150 - 99,635,870
singlet/doubletdoublet
Overlap geneAlg6, Itgb3bp, BC020077, Pgm2
Upstream geneAnkrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3
Downstream geneRor1, Ube2u, LOC277707, LOC621573, Cachd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543P01.T7 (MSMg01no543_p01.b1)MSMg01-543P01.TJ (MSMg01no543_p01.g1)
ACCAG609357AG609358
length747749
length of high quality
(start - end)
652 (51 - 702)671 (79 - 749)
definitionCHROMAT_FILE: MSMg01no543_p01.b1 PHD_FILE: MSMg01no543_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:27 2005CHROMAT_FILE: MSMg01no543_p01.g1 PHD_FILE: MSMg01no543_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,426,150 - 99,426,798)(99,635,200 - 99,635,870)
sequence
NNNCCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATAGACTGAAGTTTCTTTTAAGAGAAATAACTAACTTGA
AAATGAAGTCTAAAAACATTACATAACAAGCAGTTACATAGACTCATGAA
TCGAAGGGTATTTATCTCAGATGTAAGCATTGGTACCACTTTCTGTGAAC
TAATTTATTTTCCCCCCAGAAAATCCATCTCCAGGGCTATTACAGGAGAC
AGGAGGACAAGAGGATGGAACTACTGTAGTGTCATTGTCACTTTGAAAAT
CTTTGCAGCCAAATTGAGTTGTGTGACTGTAATGATGGATCTTTAAAATT
TTTTTGCCAAATTAATAATTTGGAAACATACTAGAAAATGTATGTCAAAA
CCGCATTGTTCTCAAAGTGCACACTTCAGGAGTTACTTCTGTATTTGAAT
GCTGTACATAGTAACTATTGGACACCTACTGATTCTTATTAATTATACAA
CCAACTGACAAAAACTGGTGTCAACTCAGGCACTTGGTGTGACTGCACAC
CCCTCCTGGATGTCTTTTAAATTCATGGCTTCTTTTTCCCATGAATTGCA
ACATCATACACATATCCATGTATTCTGCTAAGCACATAAATACAACCTGC
TCAGTCTGAGTGATGCTATTTGTAAGTTTCAGGGACCATTTGGTATTGGA
TTACCAGTAGTATGCTCTTCCCTGGGGAAGAAATATTTCTCTCACTC
NCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCAGAGACTAGATGAGCTC
TGCTCTGCTGCCGCCCACTGTCCCTACATAGCCCCAGATCACATCTATTT
TTGGCATCATGGATGACAGAAAAGATAATATCCATTTTTCTTTAATTTTC
TTTTTAGAGGTCCAGGGGAAAAAGTTTCTGTAACGAATTACTTTCAGCAT
CTCCTGCTAGTGGTTAAAAGTATCTTTGCCCAGGAGTTCTGGACATTTTC
AACGCACAAAGAGCCTATGTAGTGCTCGAGTGGTGGCCTCGAAACTAAAA
ATGCATGGTACTTGGTGTTCATTGCAGTGCAACTGTCAGCCCTCAATGCA
CCCCCTAATGTTGTCCAGAGGGAAAAATACAAGTTGAGCTAGGCCAAATG
CAGGTCCCAGAGGTAGCCCTTTCATCTTTTTCTTAATATGAATTTATAAA
CTTTTATTCCATATATCCTGCAATACCCTAACATTCAACATAAAATGCGA
CCCACCTCTGCCTTTTCAGGGAGTTTCAATCAACACAAACAAAGGGTCTG
ATGGCCTGGACTGCATGTCAGGGGAGGTGGGGAAAGCTATAGAGCCAGGC
TGAAGAGCCACTCAATGAGTCTGAATGCTGGTTTTACTGCAAACTGACTA
GAGCAAGCCTGCTTCTAGACATCTCTCTGCTTTTGCTTCTTCCTCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_p01.b1 MSMg01no543_p01.b1 CHROMAT_FILE:
MSMg01no543_p01.b1 PHD_FILE: MSMg01no543_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:27 2005
         (652 letters)



>mm_chr4_99425947_99426998
          Length = 1052

 Score = 1232 bits (637), Expect = 0.0
 Identities = 646/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatagactgaagtttcttttaagagaaataactaacttgaaaatgaagtctaa 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatagacagaagtttcttttaagagaaataactaacttgaaaatgaagtctaa 263

                                                                       
Query: 64  aaacattacataacaagcagttacatagactcatgaatcgaagggtatttatctcagatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaacattacataacaagcagttacatagactcatgaatcgaagggtatttatctcagatg 323

                                                                       
Query: 124 taagcattggtaccactttctgtgaactaatttattttccccccagaaaatccatctcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagcattggtaccactttctgtgaactaatttattttccccccagaaaatccatctcca 383

                                                                       
Query: 184 gggctattacaggagacaggaggacaagaggatggaactactgtagtgtcattgtcactt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggctattacaggagacaggaggacaagaggatggaactactgtagtgtcattgtcactt 443

                                                                       
Query: 244 tgaaaatctttgcagccaaattgagttgtgtgactgtaatgatggatctttaaaattttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaaaatctttgcagccaaattgagttgtgtgactgtaatgatggatctttaaaattttt 503

                                                                       
Query: 304 ttgccaaattaataatttggaaacatactagaaaatgtatgtcaaaaccgcattgttctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgccaaattaataatttggaaacatactagaaaatgtatgtcaaaaccgcattgttctc 563

                                                                       
Query: 364 aaagtgcacacttcaggagttacttctgtatttgaatgctgtacatagtaactattggac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 aaagtgcacacttcaggagttacttctgtatttgaatgctgtacatagtaactgttggac 623

                                                                       
Query: 424 acctactgattcttattaattatacaaccaactgacaaaaactggtgtcaactcaggcac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acctactgattcttattaattatacaaccaactgacaaaaactggtgtcaactcaggcac 683

                                                                       
Query: 484 ttggtgtgactgcacacccctcctggatgtcttttaaattcatggcttctttttcccatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttggtgtgactgcacacccctcctggatgtcttttaaattcatggcttctttttcccatg 743

                                                                       
Query: 544 aattgcaacatcatacacatatccatgtattctgctaagcacataaatacaacctgctca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aattgcaacatcatacacatatccatgtattctgctaagcacataaatacaacctgctca 803

                                                            
Query: 604 gtctgagtgatgctatttgtaagtttcagggaccatttggtattggatt 652
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtctgagtgatgttatttgtaagtttcagggaccatttggtattggatt 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no543_p01.g1 MSMg01no543_p01.g1 CHROMAT_FILE:
MSMg01no543_p01.g1 PHD_FILE: MSMg01no543_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:27 2005
         (671 letters)



>mm_chr4_99635000_99636070
          Length = 1071

 Score = 1290 bits (667), Expect = 0.0
 Identities = 670/671 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagcagagactagatgagctctgctctgctgccgcccactgtccctacatagccccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ccagcagagactagatgagctctgctctgctgccgcccactgtccctacatagccccaga 812

                                                                       
Query: 61  tcacatctatttttggcatcatggatgacagaaaagataatatccatttttctttaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tcacatctatttttggcatcatggatgacagaaaagataatatccatttttctttaattt 752

                                                                       
Query: 121 tctttttagaggtccaggggaaaaagtttctgtaacgaattactttcagcatctcctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tctttttagaggtccaggggaaaaagtttctgtaacgaattactttcagcatctcctgct 692

                                                                       
Query: 181 agtggttaaaagtatctttgcccaggagttctggacattttcaacgcacaaagagcctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agtggttaaaagtatctttgcccaggagttctggacattttcaacgcacaaagagcctat 632

                                                                       
Query: 241 gtagtgctcgagtggtggcctcgaaactaaaaatgcatggtacttggtgttcattgcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtagtgctcgagtggtggcctcgaaactaaaaatgcatggtacttggtgttcattgcagt 572

                                                                       
Query: 301 gcaactgtcagccctcaatgcaccccctaatgttgtccagagggaaaaatacaagttgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gcaactgtcagccctcaatgcaccccctaatgttgtccagagggaaaaatacaagttgag 512

                                                                       
Query: 361 ctaggccaaatgcaggtcccagaggtagccctttcatctttttcttaatatgaatttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctaggccaaatgcaggtcccagaggtagccctttcatctttttcttaatatgaatttata 452

                                                                       
Query: 421 aacttttattccatatatcctgcaataccctaacattcaacataaaatgcgacccacctc 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 451 aacttttattccatatatcctgcaatactctaacattcaacataaaatgcgacccacctc 392

                                                                       
Query: 481 tgccttttcagggagtttcaatcaacacaaacaaagggtctgatggcctggactgcatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgccttttcagggagtttcaatcaacacaaacaaagggtctgatggcctggactgcatgt 332

                                                                       
Query: 541 caggggaggtggggaaagctatagagccaggctgaagagccactcaatgagtctgaatgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caggggaggtggggaaagctatagagccaggctgaagagccactcaatgagtctgaatgc 272

                                                                       
Query: 601 tggttttactgcaaactgactagagcaagcctgcttctagacatctctctgcttttgctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggttttactgcaaactgactagagcaagcctgcttctagacatctctctgcttttgctt 212

                      
Query: 661 cttcctctgct 671
           |||||||||||
Sbjct: 211 cttcctctgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)