BAC Information

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BAC

Clone NameMSMg01-543P03
Chromosome4 (Build37)
Map Location 146,905,336 - 146,906,033
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543P03.T7 (MSMg01no543_p03.b1)MSMg01-543P03.TJ (MSMg01no543_p03.g1)
ACCAG609361AG609362
length755747
length of high quality
(start - end)		703 (53 - 755)663 (81 - 743)
definitionCHROMAT_FILE: MSMg01no543_p03.b1 PHD_FILE: MSMg01no543_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:27 2005CHROMAT_FILE: MSMg01no543_p03.g1 PHD_FILE: MSMg01no543_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACTCTACATAAGCCCTAGCCTTTGAATCTGAGAGTGC
TCACCCACCGATCCACCCACTCCTATCTCATACTACTAGCATGCTACATC
ACTGGGGCATCAAGTATGGGACCCTCATTTTTATTTCTTAATGTCATTTG
TCTCGTACATTCTGTTTCATTTTCATTTTTTCTGACATCTCCACATTAGG
ACTGACCATTCCGGAGATGGTTCAAAGAACTTGTTTCAGTAAAACTCCAA
CACCAATACCCCAGCAAAGAACACAGAACTCAGGTACAATATTTATAACC
TTCATGACTTGGGCAGATATTCCACTATACTATTCTATTCTCCAGCTTTT
AGAACCCTTGCTGTCTGTGGCTTCTTAGGGCCATGTGTTCTTCTTCATCT
TTCTTCCACCTTTTCTTCCTCTAAATTCCCCTGCCTCCTTCATCTCCTCC
TCTGCCTCCTCTTTTTCTGTCTTTGCCCTCTCTAAAATCTCCAGCCCTAC
CTTTCCCTTTTATTGCCCAATCACAAGCTCTGGCCTTTATGCAACCAACT
AAAATGGAGAGAAGGTTCACATGAAATTACATGAGTATATAGTCCACTGT
TCATTGGGGCAGCCCCTCTTGAGGAAGCAGAATAGGCATTAAAGTACAAA
CAGCACCAGGACAATCTACATTTCGTTCAATCCCTTTTGTTGAACTAAAA
GGATN

NNGGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATTGATTGGTTGATTC
TTCGTTTTTATTTTGTCTTTTTCTTAAACTTAACTAATCATGCATGAAGC
CCACCCTCCCCAGCAGGAACCACTCGTCCAACTCTGTTGCAGGCTGCCTT
TCACACAACTTCTCTGGACCTACTCTGCACAGCTTCCCCACAATGTTGCT
GCCAGACTAGACCAGAGCTGGATGTACTAGGACACTGCATCTGGGTTCTG
AGAGTTTTACAGAATCAGACTGAAGAGAGAACATGCTAGGAACAGGTAAA
GACAGAATGAGCAGGAGAAAGAGAAGGAGCCAGAAGATGAGAAAAGACTT
CTACAGTAAATTTAAGGCCAAGTGGAACAATTCAGTGTCTGAGAGAAGAA
CTCAGCTCAGAGAAGAGTTTGAGCTGGAAAAATTGAATTGAATCAGCCAG
GTAAGCATTGAGAAGGAATAAGAAGGTGGGGGGAGGAGGGGCTTATTCAG
CAGCAAAGTTCAGAGGCTGAAAACACATCAGGCCTTAGATAATACTGTAT
GGAGAGTAGAAGCTTACATGACTAGGTCTAGGTTAAAAGATGTAGGCAGG
AATCCTCCCAAATTACACTGACAATAGGAGAATGAAACTTACTTATACAG
CCCTGTGGTAAAATGTAGACACTGCTCAGTATGAAAGCTCTCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_p03.b1 MSMg01no543_p03.b1 CHROMAT_FILE:
MSMg01no543_p03.b1 PHD_FILE: MSMg01no543_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:27 2005
         (703 letters)



>mm_chr4_146905132_146906234
          Length = 1103

 Score = 1350 bits (698), Expect = 0.0
 Identities = 698/698 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactctacataagccctagcctttgaatctgagagtgctcacccaccgatccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactctacataagccctagcctttgaatctgagagtgctcacccaccgatccac 264

                                                                       
Query: 65  ccactcctatctcatactactagcatgctacatcactggggcatcaagtatgggaccctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccactcctatctcatactactagcatgctacatcactggggcatcaagtatgggaccctc 324

                                                                       
Query: 125 atttttatttcttaatgtcatttgtctcgtacattctgtttcattttcattttttctgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttttatttcttaatgtcatttgtctcgtacattctgtttcattttcattttttctgac 384

                                                                       
Query: 185 atctccacattaggactgaccattccggagatggttcaaagaacttgtttcagtaaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctccacattaggactgaccattccggagatggttcaaagaacttgtttcagtaaaact 444

                                                                       
Query: 245 ccaacaccaataccccagcaaagaacacagaactcaggtacaatatttataaccttcatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaacaccaataccccagcaaagaacacagaactcaggtacaatatttataaccttcatg 504

                                                                       
Query: 305 acttgggcagatattccactatactattctattctccagcttttagaacccttgctgtct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttgggcagatattccactatactattctattctccagcttttagaacccttgctgtct 564

                                                                       
Query: 365 gtggcttcttagggccatgtgttcttcttcatctttcttccaccttttcttcctctaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtggcttcttagggccatgtgttcttcttcatctttcttccaccttttcttcctctaaat 624

                                                                       
Query: 425 tcccctgcctccttcatctcctcctctgcctcctctttttctgtctttgccctctctaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcccctgcctccttcatctcctcctctgcctcctctttttctgtctttgccctctctaaa 684

                                                                       
Query: 485 atctccagccctacctttcccttttattgcccaatcacaagctctggcctttatgcaacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atctccagccctacctttcccttttattgcccaatcacaagctctggcctttatgcaacc 744

                                                                       
Query: 545 aactaaaatggagagaaggttcacatgaaattacatgagtatatagtccactgttcattg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aactaaaatggagagaaggttcacatgaaattacatgagtatatagtccactgttcattg 804

                                                                       
Query: 605 gggcagcccctcttgaggaagcagaataggcattaaagtacaaacagcaccaggacaatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gggcagcccctcttgaggaagcagaataggcattaaagtacaaacagcaccaggacaatc 864

                                                 
Query: 665 tacatttcgttcaatcccttttgttgaactaaaaggat 702
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tacatttcgttcaatcccttttgttgaactaaaaggat 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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