GCCGCTATACGACTCCTATATGGAGAGGATCCGCGGAATTCTTTGTTCAG
TTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCGCCT
TCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGA
TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGAC
GGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGT
CAATTCTCGATCTTACAGTACAAGCCATTGCTCTTCTGTTCAGGAATTTT
TCCCCTATGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAG
TTATACCTCTCCTTGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAG
TACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAACAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACACAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATTTATTATTATTTGTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAG
TTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGAT
TGATTCGCATTCTTCTATACGATAACAACCAGTTGTGCCAGCACCATTTG
TTGAAAATGCTGTCTTTCTCCACTGGATGGTTTTAGCTCCCTTGTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGTTCAGTTCAACAACAATTTCACATTTGTTTATGT
TATAAGGATAACTTGAATGGATTTAAGAAAAATTTTAGATGAAATTTTGA
GAGATCATCTATTTTAGGAAAATTGATATTATGCCATAATTTAAATTTTC
CTCTGTCAGGGATGTAACCCCCCTGCTCTCTTTCCTCCCTTTCCCTCTCT
CTCTCCCTCTCATACTCCCTCTCTCTCTCTCTCTCTCTCTCATACACACA
AACATACACACTAAACACACATACACCTTTTAATTGCTTTTGCAATTAGA
GAAAATGAAATGAAATTGAAACAGAACAAGAAGGTATATATAGAAGACAC
TTAAGATAGAAATAAAAAATTATATTCTGATACCAAAAAATCAAGACATT
ATAGAAAATTTCAATTAAATAGAAGAAATGCATTAATTGTGGAGTATATT
TGTAAGACAATTTAATTATATGAATCAAATGATGAATAGCATTACTAGTA
AAAATCAATTTCTTAAAATTGGATTGTTAACAAAATTTTTAAAATTACTT
TTGTCTCACTTTTCTAAGCCTAACTTATAAAAAAATATGTGTATCTCATA
AGATGAAAATTTTCAGATTTAAAGTTAAAATCACTTTTGCTCAATTTCTA
AAACAATTAGATTTTCATAATATAGTAAATATTTAATTATTAAAAGT

Query= MSMg01no545_a20.g1 MSMg01no545_a20.g1 CHROMAT_FILE:
MSMg01no545_a20.g1 PHD_FILE: MSMg01no545_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:55 2005
         (556 letters)



>mm_chr4_27335865_27336820
          Length = 956

 Score =  847 bits (438), Expect = 0.0
 Identities = 499/528 (94%), Gaps = 16/528 (3%)
 Strand = Plus / Minus

                                                                       
Query: 44  gataacttgaatggatttaagaaaaattttagatgaaattttgagagatcatctatttta 103
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 956 gataacttgaatggatataagaaaaaatttagatgaaattttgagagatcatctatttta 897

                                                                       
Query: 104 ggaaaattgatattatgccataatttaaattttcctctgtcagggatgtaacccccctgc 163
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 896 ggaaaattgatgttatgccataatttaaattttcctctgtcagggatgtaacacccctgc 837

                                                                       
Query: 164 tctctttcctccctttccctctctctctccctctca-tactccctctctctc-------- 214
           |||||||||||||| |||||||||||| |||||||| | |||||||||||||        
Sbjct: 836 tctctttcctccctctccctctctctccccctctcact-ctccctctctctctctctctc 778

                                                                       
Query: 215 ------tctctctctctctcatacacacaaacatacacactaaacacacatacacctttt 268
                 |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tctctgtctctctctctctcgtacacacaaacatacacactaaacacacatacacctttt 718

                                                                       
Query: 269 aattgcttttgcaattagagaaaatgaaatgaaattgaaacagaacaagaaggtatatat 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aattgcttttgcaattagagaaaatgaaatgaaattgaaacagaacaagaaggtatatat 658

                                                                       
Query: 329 agaagacacttaagatagaaataaaaaattatattctgataccaaaaaatcaagacatta 388
            ||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 657 ggaagacatttaagataggaataaaaaaatatattgtgataccaaaaaatcaagacatta 598

                                                                       
Query: 389 tagaaaatttcaattaaatagaagaaatgcattaattgtggagtatatttgtaagacaat 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tagaaaatttcaattaaatagaagaaatgcattaattgtggagtatatttgtaagacaat 538

                                                                       
Query: 449 ttaattatatgaatcaaatgatgaatagcattactagtaaaaatcaatttcttaaaattg 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttaattatatgaatcaaatgatgaatagcattactagtaaaaatcaatttcttaaaattg 478

                                                           
Query: 509 gattgttaacaaaatttttaaaattacttttgtctcacttttctaagc 556
           ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 477 gattgttaacagaatttttaaaattacttttgtctcacttttctaagc 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)