BAC Information

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BAC

Clone NameMSMg01-545B14
Chromosome4 (Build37)
Map Location 112,420,264 - 112,420,773
singlet/doubletsinglet
Overlap geneA030001H23Rik
Upstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581
Downstream geneLOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545B14.T7 (MSMg01no545_b14.b1)MSMg01-545B14.TJ (MSMg01no545_b14.g1)
ACCAG610242AG610243
length747738
length of high quality
(start - end)		648 (36 - 683)538 (63 - 600)
definitionCHROMAT_FILE: MSMg01no545_b14.b1 PHD_FILE: MSMg01no545_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:59 2005CHROMAT_FILE: MSMg01no545_b14.g1 PHD_FILE: MSMg01no545_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGATT
ATCCATCATTATCTTAAATTCTTTAAAGGAAAGAAAATAATTAGTTTCTT
CCCACAATAATTAAATTGTACAAAAGCAGATACATTGTGCACCTCTCTGC
ACTTTGTTATTTTTCTGTTTTGATCCTCCAGCTGCTTATTTTATTGGAGT
TTTACTTAATTTTGGGAAGTGGTTTTACAATTTATCCACCATTGAGTGTT
GTCTCCCCAGTCGGGAAGTTGTGGCAGTTTTCACATTCACACTCATTACT
ATATTACTTAGAATTTTGGTAACAAAAACTCTAAATGTATGCATTAATAA
ATTATTTTTAAAATCTATTTTAACACCTATATTTGCTATTTGCATACTAG
TCTAACTTTCAAAAGAACTTGCTTCAGTGACTAAGCTCAAGATATGGTGA
TGTAAATGCCAAAATAGACAGTGCAGAGATAGGAATTTTGTTGTCTTGAA
ATTGTTTTTCTCTTTGAAGTGAGATATATGTAACACAGAGATAAGTACAT
AAAATGTACAAATTTGTGAATTTTTGCTTGTAGACACACTCACAAACTTA
ATCTTCGACTCTAGATACTGAATATTATCAGCAGCTCAAAATGTTTTATT
AATCTTTCCTAGTCAATATCATGATCTTATTGCCAAGGTTATCAAATGTC
TATCTTTCATTGCCATAGATAAATCACAAACATTACTATATTATTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGGAGTCTTGGTGTCTTTACACTCTGTTGATCATTTTC
CTTTCTTGTACACAATCATTTTAGTTTTCTTCAGTTTTACTTAATCTTTC
TAATCTTTCTTCTGTTTACTTTTCCTATGAGGTCATATTTAAGAAAATTT
GCCAAGCTTTATTCCTTTGGTTTTTTTGTTTGTTTTTTTCATTTTGAAAT
CTTATAAACTCAGTTCTTAGCTTTACGTATTTAATCTATTGTATAGGTCA
TGAGACAAGGCTTTTATTTCATTTTATCTCATTTATGTGGACACCTAGTA
TTCATAGATCTGTTCACTGAAGAATACTGTCCTGATCCATTGTGTTTTCT
TAGTGCCTTTGACCCTCAGATAAAAATATATACCTGATACATTTCATGTA
TCTCTGTTTTGTTCCAATAGGTCTGTTTTAATGCCAGTTTTCTACAACTC
CCAGTACTCTCACTTTGCATTTTGACATTTAGAATCATGATCTTTTAAAA
CTAGCTGCTTAGAGAAGTTCTTTGACATTAAATGGAAATATAATTGGTTG
ATGAAAGTTTAAGATTGTTTTCCTGTAGTTTGGGGGATGGATTGCATTAC
TAGGTATGATCGGGATCATTATACTATAGCCTCTTATACAAGTGTGTTTG
AACATTTGTTAGACTTCAGACAGGGGAATGCAGTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_b14.b1 MSMg01no545_b14.b1 CHROMAT_FILE:
MSMg01no545_b14.b1 PHD_FILE: MSMg01no545_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:59 2005
         (648 letters)



>mm_chr4_112419726_112420773
          Length = 1048

 Score =  932 bits (482), Expect = 0.0
 Identities = 503/510 (98%)
 Strand = Plus / Minus

                                                                        
Query: 139  tcctccagctgcttattttattggagttttacttaattttgggaagtggttttacaattt 198
            ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1048 tcctccagctgcttattttgttggagttttaattaattttgggaagtggttttacaattt 989

                                                                        
Query: 199  atccaccattgagtgttgtctccccagtcgggaagttgtggcagttttcacattcacact 258
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 988  atccaccattgagtgttgtctccccagtcgggaagttgtggcagttttcacattcacatt 929

                                                                        
Query: 259  cattactatattacttagaattttggtaacaaaaactctaaatgtatgcattaataaatt 318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  cattactatattacttagaattttggtaacaaaaactctaaatgtatgcattaataaatt 869

                                                                        
Query: 319  atttttaaaatctattttaacacctatatttgctatttgcatactagtctaactttcaaa 378
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  attttaaaaatctattttaacacctatatttgctatttgcatactagtctaactttcaaa 809

                                                                        
Query: 379  agaacttgcttcagtgactaagctcaagatatggtgatgtaaatgccaaaatagacagtg 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  agaacttgcttcagtgactaagctcaagatatggtgatgtaaatgccaaaatagacagtg 749

                                                                        
Query: 439  cagagataggaattttgttgtcttgaaattgtttttctctttgaagtgagatatatgtaa 498
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 748  cagagataggaattctgttgtcttgaaattgtttttctttttgaagtgagatatatgtaa 689

                                                                        
Query: 499  cacagagataagtacataaaatgtacaaatttgtgaatttttgcttgtagacacactcac 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  cacagagataagtacataaaatgtacaaatttgtgaatttttgcttgtagacacactcac 629

                                                                        
Query: 559  aaacttaatcttcgactctagatactgaatattatcagcagctcaaaatgttttattaat 618
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 628  aaacttaatcttcgactctagatactgaatattttcagcagctcaaaatgttttattaat 569

                                          
Query: 619  ctttcctagtcaatatcatgatcttattgc 648
            ||||||||||||||||||||||||||||||
Sbjct: 568  ctttcctagtcaatatcatgatcttattgc 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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