GCGGCGCTATACGACTCACTATTTCGAGAGATCCGCGGAATTCACAGGTC
CTGAAACAAATTGGTGCCTATGTTTCAGAATATGAAGGCTCTTGAAATCT
ATTTTCCAGTAAGGCCACTTAAAACCACAGATCAGATCACCTCAGCTCCT
GCTCAACAAAAACTTCTTTTGAATTTTTTGAGAGATACTTTTAGTCAAGG
GTCCAAACATTGTTCTTTAATTTTCTTCCTTAACAACAATTTTATTTTAT
TTTTCAAACACTGAACCGATAAAATATGCCAAGAAAAAAAAGTATGTTTT
TTTTTTCTAAAATTTAAGGGTCTGATTCAAGATGACCCGTATCTGTTTGT
TCAGATATCTACCTACTCTTCCAGCTTCAATATATGAAGCTAAAAATTAA
GCATGAAGCATAGCTTTGAGTCAGAATATGTAAGAGCTGCTGTATTAGTC
AGGGTGTATAAAATGAATATATACACATATATACATATATATACATAATA
TATACACATATGTGGGATTTATTAGAATGACTTATAGCATTGTTTCTCAA
CAAGTGGCTTGTGACTCCTTTGAAGGTTGAATGACCCTTTCACAGGGTCC
TCATATCAGATATCATGCATACCAAATATTTACATTATGATTCATAATAA
TAATAATAAAATTATAGTTATGAAGTAGCAATGAAAATAATTTTGTGGTT
GGGGATCACCACAACATGAGGAACTGTATTTAAAAAGCTTTCAGCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTCTCACTCTTCGATTGTGAAGAGCATCTGCAAC
AGCTGTTGGCAATCATCCCAAGTAGGCTGATGAGAGAACATAAGGAACTT
TACCAACCCTGTGAGGCGTTGAGGATCCTCTGAGAAAGGGGGGTGGTTAG
TTTTCCAGTTATAAAGATCAGCAGAGGAAAATGACCAGTACTTTAGGGTT
TGAAGTTTGGGCGGGTCCACCAGAGTCCCCGGACTCTGTGCTTTGCAGCT
CCATGTACCCACAGCGGTCTGCCTCTCTCTGCCCCAAGGGATTCAGGGCT
CCCTCAGTGGCTGGGGTTGAGGCTGTGGATAAAGGGGAGGTAGTGGACTT
GGCCACTCAGGAGGCTTCATAGATTTTGGAGGAGACGATGGATTTAGCTG
GTGGCTCCGATTTGGGAGAAGCCTTCAATTTCTTTTGTAACATGAGAGTA
CAACCACAATTTTGGGAAGCAAAACCCAATTTTAACAGTGTAAACAATCC
ATTCTCTTTAAAAATCAATGCCAAAAACATTACTTGTTACAAAGTTTGGC
TGCCTGTTCCTGCACACAAATGCAAGAAGTTGTAGCCGCCAATACCTCAA
AAAGACACTGCCCTAAATCCTATCTTTTATAAGTCTGGTTTCTAGGATAA
GAATTACATAGAATATTACCCAATTCAGGCATATCTCTAGAGACCTGT

Query= MSMg01no545_b15.b1 MSMg01no545_b15.b1 CHROMAT_FILE:
MSMg01no545_b15.b1 PHD_FILE: MSMg01no545_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:59 2005
         (677 letters)



>mm_chr4_54197781_54198860
          Length = 1080

 Score = 1208 bits (625), Expect = 0.0
 Identities = 635/639 (99%), Gaps = 3/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattc-acaggtcctgaaacaaattggtgcctatgtttcagaatatgaaggctcttgaa 66
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaattcaacaggtcctgaaacaaattggtgcctatgtttcagaatatgaaggctcttgaa 580

                                                                       
Query: 67  atctattttccagtaaggccacttaaaaccacagatcagatcacctcagctcctgctcaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atctattttccagtaaggccacttaaaaccacagatcagatcacctcagctcctgctcaa 520

                                                                       
Query: 127 caaaaacttcttttgaattttttgagagatacttttagtcaagggtccaaacattgttct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caaaaacttcttttgaattttttgagagatacttttagtcaagggtccaaacattgttct 460

                                                                       
Query: 187 ttaattttcttccttaacaacaattttattttatttttcaaacactgaaccgataaaata 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttaattttcttccttaacaacaattttattttatttttcaaacactgaaccgataaaata 400

                                                                       
Query: 247 tgccaag--aaaaaaaagtatgttttttttttctaaaatttaagggtctgattcaagatg 304
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgccaagaaaaaaaaaagtatgttttttttttctaaaatttaagggtctgattcaagatg 340

                                                                       
Query: 305 acccgtatctgtttgttcagatatctacctactcttccagcttcaatatatgaagctaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acccgtatctgtttgttcagatatctacctactcttccagcttcaatatatgaagctaaa 280

                                                                       
Query: 365 aattaagcatgaagcatagctttgagtcagaatatgtaagagctgctgtattagtcaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 279 aattaagcatgaagcatagctttgagtcagaatatgtaagagctgctgtattagtaaggg 220

                                                                       
Query: 425 tgtataaaatgaatatatacacatatatacatatatatacataatatatacacatatgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgtataaaatgaatatatacacatatatacatatatatacataatatatacacatatgtg 160

                                                                       
Query: 485 ggatttattagaatgacttatagcattgtttctcaacaagtggcttgtgactcctttgaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggatttattagaatgacttatagcattgtttctcaacaagtggcttgtgactcctttgaa 100

                                                                       
Query: 545 ggttgaatgaccctttcacagggtcctcatatcagatatcatgcataccaaatatttaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ggttgaatgaccctttcacagggtcctcatatcagatatcatgcataccaaatatttaca 40

                                                  
Query: 605 ttatgattcataataataataataaaattatagttatga 643
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  ttatgattcataataataataataaaattatagttatga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1080
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1070
Effective search space:   713690
Effective search space used:   713690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)