XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
ATGATGTTATCATACAAATTATACTTAAAAATAAGGTAAATTCTTATATT
TTAAATTAATAAGAATGATTATTGGTTTAAAACTATACGAATGAGATACA
TAGGTATCTATTCTATTTTGAAAACTGGTTCCACATCCCTACCACATTGC
ATAACATTTCATATTCATACTTTTTTAAAATATTCATCACTGGCAGACAA
GAAAAGGGAAGCATGATAAACACTCCTCTTTAAAAAGTTGCACTGAGCAG
AATGTTCCAAAAATATGCTATAATGAAGAAGCTCAAATGTGGAAAGTTCA
ATTAAAGTAATAAATTAAAAACATACTTGAAATTAGATTCTTAAGTTTAT
AGTAGCTTCTAGAACTTATTTCTACCCAAGCCTGTTAATGCAGGCAGTAT
TGTTATTCAATCCTATTTAACTTAAACTGCAAATTACTTACTGAGTATAT
GCTTGAATTATATGCATTCCACATCTGTCAATTCTCTGATAAAATTAATT
GCTAAAATGTTTTATTGATGACCAAGTAAGTAGATGAATCAGCCTAGCCA
CTTTAATAGCTTAACCTCTGATTAAAACTCCCATCATCAATCCTTGACAT
AAAAATATTCCTTAATTAAATATTTTAAATAATGAGATGATGGAACCAAG
TAATTGACAAAGCTTTGGTTGCATGGTTTAGN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATGTCACTGGAGTAGTCGCTGAGAGCTATATCCTA
ATCTATAGGCAGAAAGACAGAGACAGAGAGACTATATATATATATATATT
ACACGTATATAATACATACATACATATCAGTTCTCTCTCTATATATAATC
TATATCTATATCCCCCCTTTCTCTAATGAAATATTCTTAGCTTGGGCATT
TGAAACTACAAAATCTATCCCAAGTGACACACTTCCTCCAACAGGGCTAC
ACCTACTCCAGCAAGGCTACATCTACTCCAGCAAGGCCACAAGTCCTAAT
CCCCAAGTACTGCCACTCTCTAATGATTGATCATTTAAATATAGTAGCCT
ATGGGGGCCATTCTTATTCAAACCACTATATCTTTTTTCTTTTCAGCACC
TTCTTCCTCTCTCCTACTCTCTCACTTTCATTCAACCTCTCTCAGTTTTG
TTCTCTCCCAGCCCCTCTCTTCATCTTCTTTTTCCTTTTTTTTCCTTTTT
TATATCGCTCACCGTCATTCCCATGTCCTTCTCTCCCTCTCTGTCTTTAG
CCTTCTCTCCCTCTTTCTCCTATTTTCTCATTTTCTTTTTCCCTTATTCC
CTTCTTTTCTCTCTTGCTCTCCCTATCCTCTTTCCCCCTTTTTCTGTCCT
ACTGCTCCNTTCCCCCCTCCTGTTTCTC

Query= MSMg01no545_p12.b1 MSMg01no545_p12.b1 CHROMAT_FILE:
MSMg01no545_p12.b1 PHD_FILE: MSMg01no545_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:06 2005
         (692 letters)



>mm_chr4_70406555_70407647
          Length = 1093

 Score = 1286 bits (665), Expect = 0.0
 Identities = 683/689 (99%), Gaps = 1/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgatgatgttatcatacaaattatacttaaaaataaggtaaattcttatatt 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaattctttgaagatgttatcatacaaattatacttaaaaataaggtaaattcttatatt 767

                                                                       
Query: 65  ttaaattaataagaatgattattggtttaaaactatacgaatgagatacataggtatcta 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 766 ttaaattaataagaatgattattggtttaaaactatacaaatgagatacataggtatcta 707

                                                                       
Query: 125 ttctattttgaaaactggttccacatccctaccacattgcataacatttcatattcatac 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 706 ttctattttgaaaactggttccacattcctaccacattgcataacatttcatattcatac 647

                                                                       
Query: 185 ttttttaaaatattcatcactggcagacaagaaaagggaagcatgataaacactcctctt 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tttttaaaaatattcatcactggcagacaagaaaagggaagcatgataaacactcctctt 587

                                                                       
Query: 245 taaaaagttgcactgagcagaatgttccaaaaatatgctataatgaagaagctcaaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taaaaagttgcactgagcagaatgttccaaaaatatgctataatgaagaagctcaaatgt 527

                                                                       
Query: 305 ggaaagttcaattaaagtaataaattaaaaacatacttgaaattagattcttaagtttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggaaagttcaattaaagtaataaattaaaaacatacttgaaattagattcttaagtttat 467

                                                                       
Query: 365 agtagcttctagaacttatttctacccaagcctgttaatgcaggcagtattgttattcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agtagcttctagaacttatttctacccaagcctgttaatgcaggcagtattgttattcaa 407

                                                                       
Query: 425 tcctatttaacttaaactgc-aaattacttactgagtatatgcttgaattatatgcattc 483
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 406 tcctatttaacttaaactgcaaaattacttactgagtatatgcttgatttatatgcattc 347

                                                                       
Query: 484 cacatctgtcaattctctgataaaattaattgctaaaatgttttattgatgaccaagtaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacatctgtcaattctctgataaaattaattgctaaaatgttttattgatgaccaagtaa 287

                                                                       
Query: 544 gtagatgaatcagcctagccactttaatagcttaacctctgattaaaactcccatcatca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtagatgaatcagcctagccactttaatagcttaacctctgattaaaactcccatcatca 227

                                                                       
Query: 604 atccttgacataaaaatattccttaattaaatattttaaataatgagatgatggaaccaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 atccttgacataaaaatattccttaattaaatattttaaataatgagatgatggaaccaa 167

                                        
Query: 664 gtaattgacaaagctttggttgcatggtt 692
           |||||||||||||||||||||||||||||
Sbjct: 166 gtaattgacaaagctttggttgcatggtt 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space:   738606
Effective search space used:   738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)