BAC Information

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BAC

Clone NameMSMg01-546F20
Chromosome4 (Build37)
Map Location 88,517,240 - 88,517,864
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1
Downstream geneIfne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546F20.T7 (MSMg01no546_f20.b1)MSMg01-546F20.TJ (MSMg01no546_f20.g1)
ACCAG611207AG611208
length746743
length of high quality
(start - end)		713 (34 - 746)675 (69 - 743)
definitionCHROMAT_FILE: MSMg01no546_f20.b1 PHD_FILE: MSMg01no546_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:38 2005CHROMAT_FILE: MSMg01no546_f20.g1 PHD_FILE: MSMg01no546_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAACCC
GACCACTTCTCCCTCCTCCTAGCCTGGGCATGGATATAAACATGTGTGTT
ATTAATGGTGACCACTGGACTGCAGCTATGCTGCAGGTTTCTATTTGCTG
TGGGTATAACCAGAGGAGCCAGTTTAGGTGAGAGTCAGTGTCAGAGGGAC
TGGATGGAGCGTAGATGAAGCTCCTCCGACACCTGGTTTTGTTTTATTAA
TGCACACAGTCCCTGTTACTAACATGAATCAATTAAAGCCTGCCCAACTC
TTTACTGGTCTGGGCCCTCCAATCTGTTGCCATTAAAGCAGAGACTTATT
CTTTAATATCAGCCAAGAACCAGTTGACTGCTTTGGTGATGTGGGCAAGG
GGGCTTAAATGGTAGATCATAATTACTAGTGACTCATTCGCTCTATCCTT
TTAGCAAGTGTTCTAGTTTGGTTTTTAAACACTTACCAAAAACAACTTAA
GAAGAAAAAGATTTATTTCATCTTACAAGGCACACCATTATCAAGGGAAG
CAAGGGCAGGAATCGGGAGGCAGGAACTGAAGCAGAGACCATGAAGGAGT
GTTGCTTGCTTGCTTGCTTTCCCTGGCTTGCTCAGTCTGTCTGCTTGCTT
CCTTCCTTTCTTTCTTAAAAGACATATTTGTGGTAGAAAGCTTTTTAATT
GTTACTAAGTTTAAGACATAATTTCTTACTTTGGTACAAAATTTGT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAATGGGAGAGTAAACTCGTGCTGACTTACAGAGG
GAGGGTTGATGTCAGAAGGAGCAGAGACAGGCACACTTGACAGAAGCCCT
CCCTGTGGGGGGCTGAGCAAGAGGCCATCTACCCGAAAATGCCCTTTTGG
TGAGGGTGACTTTTGAGAGATGGAAACAGGGAGGAGGGGCCTGGCCAGGA
GGAGGAGCGCCAACTTCCTGGCTGAGAGGTCCAACTGCTCCCTGCTCAGC
AGAGCTCCTGAGAGGAGAGGGGCAAGACCATACTGTCTGTCCTCTCTCTG
GAACTGTCTGCCTGTTGGGGCCCAGCTCTCCTCTCTGCCAACTCCACTTC
CTTCTTCTCCACTCGCGTTAGAGAGCTGGAAGGGTCTGGCGGGCCACCCA
AACGCACCAAGATGCGAACCAAACAAACGAAAGGAAACCGAACCAAAGGA
GACCAAACCAAACCCAGCCCAGCCAAACCAAAACGCTGCTCTCTGGGCTT
TGGAGCCTTCCCGGTTCCCCTAAAACATGTCCCCTGGCCCACCAATTCCG
TCTGGGTTCAATTCTCAAGGCGCGATGGATGGCGTACAGTCCTGTACGCG
AAGGAGCCCGGGAGAGAGGCAGGAGACACTCCCTGCCTGCCCGGAGTCGC
GCGCTGAACGGGGCGAACGGCCTCCGCAGGCGCCCGCTGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_f20.b1 MSMg01no546_f20.b1 CHROMAT_FILE:
MSMg01no546_f20.b1 PHD_FILE: MSMg01no546_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:38 2005
         (713 letters)



>mm_chr4_88517240_88518352
          Length = 1113

 Score = 1170 bits (605), Expect = 0.0
 Identities = 620/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaacccgaccacttctccctcctcctagcctgggcatggatataaacatgtgt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcctaacccggccacttctccctcctcctagcctgggcatggatataaacatgtgt 566

                                                                       
Query: 65  gttattaatggtgaccactggactgcagctatgctgcaggtttctatttgctgtgggtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttattaatggtgaccactggactgcagctatgctgcaggtttctatttgctgtgggtat 506

                                                                       
Query: 125 aaccagaggagccagtttaggtgagagtcagtgtcagagggactggatggagcgtagatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccagaggagccagtttaggtgagagtcagtgtcagagggactggatggagcgtagatg 446

                                                                       
Query: 185 aagctcctccgacacctggttttgttttattaatgcacacagtccctgttactaacatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagctcctccgacacctggttttgttttattaatgcacacagtccctgttactaacatga 386

                                                                       
Query: 245 atcaattaaagcctgcccaactctttactggtctgggccctccaatctgttgccattaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcaattaaagcctgcccaactctttactggtctgggccctccaatctgttgccattaaa 326

                                                                       
Query: 305 gcagagacttattctttaatatcagccaagaaccagttgactgctttggtgatgtgggca 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 325 gcagagacttattctttaatatcaaccaagaaccagttgactgctttggtgatatgggca 266

                                                                       
Query: 365 agggggcttaaatggtagatcataattactagtgactcattcgctctatccttttagcaa 424
           |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 agggggcttaaatggtaggtcataattactagtgactcattcgctctatctttttagcaa 206

                                                                       
Query: 425 gtgttctagtttggtttttaaacacttaccaaaaacaacttaagaagaaaaagatttatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtgttctagtttggtttttaaacacttaccaaaaacaacttaagaagaaaaagatttatt 146

                                                                       
Query: 485 tcatcttacaaggcacaccattatcaagggaagcaagggcaggaatcgggaggcaggaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tcatcttacaaggcacaccattatcaagggaagcaagggcaggaatcgggaggcaggaac 86

                                                                       
Query: 545 tgaagcagagaccatgaaggagtgttgcttgcttgcttgctttccctggcttgctcagtc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tgaagcagagaccatgaaggagtgttgcttgcttgcttgctttccctggcttgctcagtc 26

                                    
Query: 605 tgtctgcttgcttccttcctttctt 629
           |||||||||||||||||||||||||
Sbjct: 25  tgtctgcttgcttccttcctttctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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