BAC Information

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BAC

Clone NameMSMg01-546I12
Chromosome4 (Build37)
Map Location 35,434,871 - 35,435,504
singlet/doubletsinglet
Overlap genenone
Upstream gene2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546I12.T7 (MSMg01no546_i12.b1)MSMg01-546I12.TJ (MSMg01no546_i12.g1)
ACCAG611334AG611335
length722726
length of high quality
(start - end)
638 (41 - 678)372 (72 - 443)
definitionCHROMAT_FILE: MSMg01no546_i12.b1 PHD_FILE: MSMg01no546_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:51 2005CHROMAT_FILE: MSMg01no546_i12.g1 PHD_FILE: MSMg01no546_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATT
CTTCTATTGTGAGTTTGTAGGAACCATAGATGTTTCAGAGGGAATGTTAG
GAGAGCAAAGCTCACTGTTTCCCACACAAGTACCTGACAAACATATCATC
TATATTTTGAAAGTTCTCTTCTACCTAAAAAGGGCAGGTTTTGTAGGAAT
AGTGAGAGGGAAATTTGAAAGAGTTCTGCTCATTAACTTACTAAATTTCT
TTCAGTAACTTAAGATGAAAAATAGAAAAATGCAGACAACAGTAAATCAC
CATTAATCCTGAAACAACTAGTCAATTTTTATATTATTTGAACTATTTTG
TTATATCCTGATATATAATGAATGTTTAAAATTTGTTTAAACCTAAAATA
CTATGCCAATATATTGTTTCATAATATGCTTTCCTGGTTTTGATTAACAA
TACAGAATGTCTATTGAACTGACCCTAACCCAGACATTTGCTAATTCTTT
TGTAGAGGGACAAGCAACAAATCTTATCCACTTTATGAAACATACATACT
TGGCAATCCTATCTGTGTTATAGCCAGGAGCCATCATAGACAACATATAA
GTGAATGAACCTCACTGTGCTACAATAACATTTTCCCTCACAAAAATATA
TTCCACACATATATTGTGTATAGATTGGAAGACTCAACATAATAAAATTA
TCAACTACACTCTTGCTTGTAT
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCAAATGGCTGAGAA
GCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAATCCTGATATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCAGTTCCTCAGAAAATTGGACATAGTATCATCTGAGGATCCCGCA
ATACCTCTTCCTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGAAGG
ACACATGCTTCACTATGTCCATAGAAACCTTATTTATAATAGCCAGAATC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCTTCTATTAAAAAGAATGAATTTG
TGAAATTCCTAGGCAAATGGTTGGACCTATAGGGCATCCATCCTGATTGA
GGTAACCCATTCCTCATGGAACTCACTCTATATGTACTCACTGATAAGTT
GATATTAGCCCATATACTTAGAGTTCCCCCGATATAAGATACCATTTGCC
AAACTTATGAAACTCATGAATAACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_i12.b1 MSMg01no546_i12.b1 CHROMAT_FILE:
MSMg01no546_i12.b1 PHD_FILE: MSMg01no546_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:51 2005
         (638 letters)



>mm_chr4_35434850_35435888
          Length = 1039

 Score = 1195 bits (618), Expect = 0.0
 Identities = 630/634 (99%), Gaps = 1/634 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttctattgtgagtttgtaggaac-catagatgtttcagagggaatgttaggaga 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 655 gaattcttctattgtgagtttgtaggaacacatagatgtttcagagggaatgttaggaga 596

                                                                       
Query: 65  gcaaagctcactgtttcccacacaagtacctgacaaacatatcatctatattttgaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcaaagctcactgtttcccacacaagtacctgacaaacatatcatctatattttgaaagt 536

                                                                       
Query: 125 tctcttctacctaaaaagggcaggttttgtaggaatagtgagagggaaatttgaaagagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tctcttctacctaaaaagggcaggttttgtaggaatagtgagagggaaatttgaaagagt 476

                                                                       
Query: 185 tctgctcattaacttactaaatttctttcagtaacttaagatgaaaaatagaaaaatgca 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 475 tctgctcattaacttactaaatttctttcagtcacttaagatgaaaaatagaaaaatgca 416

                                                                       
Query: 245 gacaacagtaaatcaccattaatcctgaaacaactagtcaatttttatattatttgaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gacaacagtaaatcaccattaatcctgaaacaactagtcaatttttatattatttgaact 356

                                                                       
Query: 305 attttgttatatcctgatatataatgaatgtttaaaatttgtttaaacctaaaatactat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 attttgttatatcctgatatataatgaatgtttaaaatttgtttaaacctaaaatactat 296

                                                                       
Query: 365 gccaatatattgtttcataatatgctttcctggttttgattaacaatacagaatgtctat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gccaatatattgtttcataatatgctttcctggttttgattaacaatacagaatgtctat 236

                                                                       
Query: 425 tgaactgaccctaacccagacatttgctaattcttttgtagagggacaagcaacaaatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgaactgaccctaacccagacatttgctaattcttttgtagagggacaagcaacaaatct 176

                                                                       
Query: 485 tatccactttatgaaacatacatacttggcaatcctatctgtgttatagccaggagccat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tatccactttatgaaacatacatacttggcaatcctatctgtgttatagccaggagccat 116

                                                                       
Query: 545 catagacaacatataagtgaatgaacctcactgtgctacaataacattttccctcacaaa 604
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 115 catagacaacatataagtgaatgaacctcactatgctacaataacattttccctcacaaa 56

                                             
Query: 605 aatatattccacacatatattgtgtatagattgg 638
           ||||||||||| ||||||||||||||||||||||
Sbjct: 55  aatatattccatacatatattgtgtatagattgg 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space:   646212
Effective search space used:   646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)