BAC Information

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BAC

Clone NameMSMg01-547A12
Chromosome4 (Build37)
Map Location 144,097,171 - 144,097,753
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3
Downstream gene9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547A12.T7 (MSMg01no547_a12.b1)MSMg01-547A12.TJ (MSMg01no547_a12.g1)
ACCAG611715AG611716
length756751
length of high quality
(start - end)		655 (33 - 687)583 (62 - 644)
definitionCHROMAT_FILE: MSMg01no547_a12.b1 PHD_FILE: MSMg01no547_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:32 2005CHROMAT_FILE: MSMg01no547_a12.g1 PHD_FILE: MSMg01no547_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGTCTT
TAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATC
CATTCCTCTGTTGAGGGACATCTGGGTTCGTTCCAGCTTCTGGCTATTAT
AAATATGGCTGCTATGAACACAGTGGAGCATGTGACCTTATTACAAGTTG
GAACATCTTCTGGAGTGGTATTACTGGATCCTCTGGTAGTACTATGCCCA
ATTTTTTGAGGAACCACCAAACTGATTTCCGAGTGGTTGTACCATCTTGC
AATCCCACCAGCAGTGGAGGAGTGTTCCTCTATCTCCACATCCTTGCCAG
CATCTCCTTTCACCCGGGTTTTTTATTTTAGCCATTCTGATTGGTGTGTG
GTGGAATCTCAAGGTTATTTTATTTGCATTTCCCTGATGACTACGGATGT
TGAACATTACTTTAGGTGCTTCTCGGCCATTCGATATTCCTCAGTTGAGA
ATTCTTTGTTTAGCTATGTACTACATTTTTAATAGGGTTATTTGATTCTC
TGGAGTCTTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCTTCT
ATTTGATGTAGTATTGGTAAAGATTTTTTCCCCAATCTGTTGGTTGCCAT
GAACATTGCTGCTCTGAACATTGATCAGAAGTTTCTCTTTGCAGTGGGCT
TCAGTTAATATGAGACTCAACTGATCCAATCACTTATTCCTAAGTGGCAT
AACTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTGGTGGGGAGTGGGTCATGTTGGTTCTGTAGATGTGA
TAGTAACTAGAAATTGATTGCCTGAAGGACTGGATAAACCAGGACTTGGG
CCCAGATCTGTGGGAAGATCTGATCTGCCCAATAAGGCCTGAATTATGAT
ATCTGCAGCTAATCCTCAGATGCTTTCTCCACAGACCACATCCTTGGAGG
GGTCAACCCTATAGGTTTTCAGGAACTTTTGGAAATGGACTGCAGCATTT
AGACAGTTCTGAGCAGCAAAAGGGTAATAGTAGTCGGGAAACATTTTGTA
CTTGAAGAGAAAAAGAAAAGACATTACGCTGATAAGTGTAGAGGTGGGTG
ATGTCCATTTAGACATGGTTCTCTATGCATGTAAGACTGAATTGGATTAC
TTCCTGAAATGACTAAAGAAGTAAGAATAGTTAATCCACCCTTTTTTTTC
CTTATGTGAATCTAAAGAATTTCCTCTGAGTCAAAACAGCTGGGATTCTC
TATTTAGACTCCCCTGGTAATTCAGAGATGATAAGGCAAATCATGTAACC
TAAGAGCTATAGGCTCCAGGAGTTTAAATGTAGCCAAGGGAAAGATCTCT
ACTAGCCCTGACCTGGACTCTAGACCTTGTGAACTGCCCAGCTTTGATCC
CTCCTCTATCACCCCTGAGTCTTTCATTCCTTTTCATAGCCTCTAGTTGG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_a12.g1 MSMg01no547_a12.g1 CHROMAT_FILE:
MSMg01no547_a12.g1 PHD_FILE: MSMg01no547_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:32 2005
         (583 letters)



>mm_chr4_144096971_144097953
          Length = 983

 Score = 1127 bits (583), Expect = 0.0
 Identities = 583/583 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggtggggagtgggtcatgttggttctgtagatgtgatagtaactagaaattgattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tttggtggggagtgggtcatgttggttctgtagatgtgatagtaactagaaattgattgc 724

                                                                       
Query: 61  ctgaaggactggataaaccaggacttgggcccagatctgtgggaagatctgatctgccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctgaaggactggataaaccaggacttgggcccagatctgtgggaagatctgatctgccca 664

                                                                       
Query: 121 ataaggcctgaattatgatatctgcagctaatcctcagatgctttctccacagaccacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ataaggcctgaattatgatatctgcagctaatcctcagatgctttctccacagaccacat 604

                                                                       
Query: 181 ccttggaggggtcaaccctataggttttcaggaacttttggaaatggactgcagcattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ccttggaggggtcaaccctataggttttcaggaacttttggaaatggactgcagcattta 544

                                                                       
Query: 241 gacagttctgagcagcaaaagggtaatagtagtcgggaaacattttgtacttgaagagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gacagttctgagcagcaaaagggtaatagtagtcgggaaacattttgtacttgaagagaa 484

                                                                       
Query: 301 aaagaaaagacattacgctgataagtgtagaggtgggtgatgtccatttagacatggttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aaagaaaagacattacgctgataagtgtagaggtgggtgatgtccatttagacatggttc 424

                                                                       
Query: 361 tctatgcatgtaagactgaattggattacttcctgaaatgactaaagaagtaagaatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctatgcatgtaagactgaattggattacttcctgaaatgactaaagaagtaagaatagt 364

                                                                       
Query: 421 taatccacccttttttttccttatgtgaatctaaagaatttcctctgagtcaaaacagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taatccacccttttttttccttatgtgaatctaaagaatttcctctgagtcaaaacagct 304

                                                                       
Query: 481 gggattctctatttagactcccctggtaattcagagatgataaggcaaatcatgtaacct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gggattctctatttagactcccctggtaattcagagatgataaggcaaatcatgtaacct 244

                                                      
Query: 541 aagagctataggctccaggagtttaaatgtagccaagggaaag 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aagagctataggctccaggagtttaaatgtagccaagggaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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