Query= MSMg01no547_m02.b1 MSMg01no547_m02.b1 CHROMAT_FILE:
MSMg01no547_m02.b1 PHD_FILE: MSMg01no547_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:28 2005
(687 letters)
>mm_chr4_104887317_104888403
Length = 1087
Score = 1036 bits (536), Expect = 0.0
Identities = 626/682 (91%), Gaps = 43/682 (6%)
Strand = Plus / Minus
Query: 6 ggaattctggaggctcccctcattcccagttcatggtacaggtccaagctactcaagagg 65
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 975 ggaattctggaggctcccctcattcccagttcatggtacaggtccaagctacccaagagg 916
Query: 66 acagtaaaccttgctggcatggcgctgccaagtgtgcctatgatcctgagccaaaagaga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 acagtaaaccttgctggcatggcgctgccaagtgtgcctatgatcctgagccaaaagaga 856
Query: 126 ctttcccagtatcaaggagagtctgaaagagcttcagcaaggacctcagcactccaaaac 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ctttcccagtatcaaggagagtctgaaagagcttcagcaaggacctcagcactccaaaac 796
Query: 186 agcagcagcagcaacaacaacaacaacaacaacaacaacagtaacagtaacaacaatcaa 245
||||||||||| || || || |||||||||||||||||||||||||||||
Sbjct: 795 agcagcagcag---------cagcagcagcaacaacaacagtaacagtaacaacaatc-- 747
Query: 246 gttgcatacaagtaacagtaacaacaatcaagttgcataggaaaggactgaggagagctg 305
| ||||||||||||||||||||||||||||||
Sbjct: 746 -----------------g------------agttgcataggaaaggactgaggagagctg 716
Query: 306 aacaaaaccagttagttaccccgatcacatccaacctgctcctgacctctggtcctgcct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aacaaaaccagttagttaccccgatcacatccaacctgctcctgacctctggtcctgcct 656
Query: 366 gtgtttgcttctctttgtgaagggttctgagctgaagaacttggtgctcagaacccaggg 425
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtgtttgtttctgtttgtgaagggttctgagctgaagaacttggtgctcagaacccaggg 596
Query: 426 gctaagcattactgggacactgtgatggacactgtgcaagagtgcagtcctgcagtgaga 485
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 595 actaagcattattgggacactgtgatggacactgtgcaagagcgcagtcctgcagtgaga 536
Query: 486 acgagattccacatgtgagcctggccgggtcatcctgcttttctgaagtcccatttctgt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 acgagattccacatgtgagcctggccgggtcatcctgcttttctgaagtcccatttctgt 476
Query: 546 gtcgagcctgagagctgctcatttttttttttttttttaatgctgcaagtgtggatcatg 605
||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 475 gtcgagcctcagagctgctcattttttttttttta---aatgctgcaagtgtgcatcatg 419
Query: 606 ttcaaaaaccggaaaggcatatcagtgaaatctggtttgttgcaaaaagtaacagaaata 665
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttcaaaaaccggaaagacatatcagtgaaatctggtttgttgcaaaaagtaacagaaata 359
Query: 666 acgatacccctgcatcctaaca 687
||||||||||||||||||||||
Sbjct: 358 acgatacccctgcatcctaaca 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_m02.g1 MSMg01no547_m02.g1 CHROMAT_FILE:
MSMg01no547_m02.g1 PHD_FILE: MSMg01no547_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:28 2005
(609 letters)
>mm_chr4_104708230_104709236
Length = 1007
Score = 1112 bits (575), Expect = 0.0
Identities = 600/609 (98%), Gaps = 2/609 (0%)
Strand = Plus / Plus
Query: 1 acaggtgtaagttagcaagcaccaccgcactcacccagtaatacccatgcaaacttgtca 60
|||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 201 acaggtgtaagttagcaagcgccaccacactcacccagtactacccatgcaaacttgtca 260
Query: 61 caggcacaggagagttacagagttctacgagtaaacagaatgctggatttctgtgttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggcacaggagagttacagagttctacgagtaaacagaatgctggatttctgtgttttc 320
Query: 121 ggtgatttcaataacactgcatgtcacctgggaatgttcacaccaacttctattgcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgatttcaataacactgcatgtcacctgggaatgttcacaccaacttctattgcagag 380
Query: 181 catgtaataccgagagtgagataataatttaaagagtgtatgtgatttcacagggcggtg 240
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 cacgtaataccgag--tgagataataatttaaagagtgtatgtgatttcacaggggggtg 438
Query: 241 acagaaagacagagaccaggggtggataatcaacgagctaaagcagtgataagactggcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acagaaagacagagaccaggggtggataatcaacgagctaaagcagtgataagactggcg 498
Query: 301 cacatttcaaaaaaatccatggtgtgactgcccaggcgcggggatgccgaggacaaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cacatttcaaaaaaatccatggtgtgactgcccaggcgcggggatgccgaggacaaagtg 558
Query: 361 ctgccagtcaaagaaccagtgagagagccagaaagggagtggctctcagctgtgctggaa 420
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 ctgccagtcaaagagccagtgagagagccagaaagggagtggttctcagctgtgctggaa 618
Query: 421 tcaaaacttgaccgtgctctgtggaggcccgcagcagaacaggagcgctggggtgttgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcaaaacttgaccgtgctctgtggaggcccgcagcagaacaggagcgctggggtgttgaa 678
Query: 481 gaaccagacctctgctccaccacctcatctgaaacgaccaaagaacagtaaacatagcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaaccagacctctgctccaccacctcatctgaaacgaccaaagaacagtaaacatagcaa 738
Query: 541 cagccgagtgcttgcccgagtcctcccggggaagatgctgcagaaggcgaagtaaaaccg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagccgagtgcttgcccgagtcctcccggggaagatgctgcagaaggcgaagtaaaaccg 798
Query: 601 atctgagca 609
|||||||||
Sbjct: 799 atctgagca 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1007
Length adjustment: 10
Effective length of query: 599
Effective length of database: 997
Effective search space: 597203
Effective search space used: 597203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
