CCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGTGGTTTCATTTGAGCTTCACAGGTTCTGGTTGCTTTGAAGGT
ATATTTTGAGATATAAAACACATTTATTGTTTTGTTACTTCTATGTATAG
CTTTTGATAGTTAGTCACGTTGTAGGTAAGAATAGGTTTCTGTTTGTTCT
TTTGCCCTCAGCACCTGGAATGTTGGAGGAGGGCTGTCTGTTTGACAGGA
CTGAGCCAAATACCTGAGTGGGAGGCACAGAAGGGAGTATTCCTGGCCTT
TCCTACCAGTGTTCAAACTCTCCATTCTGAATGCTACAGAGAAGCAGTTG
CGTCTTTAAGAATAGAAAGACTACTGGTCGGGTATAGTGATTGCTGTCCT
GTATTCAAGGCACGTTGCTTTCCTGGCAGATTCGTCGGGGCCTTTCTCTT
TTTGTATCCTGTGCATGTCTTGGTAAAGTGCTAAGTGTTTTGTGCTGTTA
CAAATGCCCCTTTTGTATCACACCAACCCCTGCTGGTGGCTCCTAGCCGC
TTACAATAGGTTGAACATTTATTTCCGCTAAGACATTTCAAAAGGGACAC
ACGGGTCTTCTGTATCGGGAAAACTTGCCTTCCCCCAACTTCCTTTTTCA
GCCCCTCCCCAAAAGTTGAATGCCCCAGGATTAAGCTCCCCCTAGGCTGT
CCTTTTTTCAAGTTTCCTGGAAAATATGCCAAAAACTATATAAAAAGGGA
AGGG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGTTTTTAACAGCTGAGTAGTACTC
CATTTGTAGATGTACCACATTTTCTGTATCTACTCCTCTGTTGAGGGACA
TCTGGGTTCTTCCCAGCTTCTGGGTATTATAAATAAGGCTACTATGAACA
TAGTAGAGCATGTGTCCTTATTACATGTTGGTGCATCTTCTGGGTATATG
CCCAGGAGTGGTATAGCTGGGTCCTCAGATAGTACTGTCCAATTTTCTGA
GGAACCGGCAAACTGATTTCCATAATGGTTGTACCAGCTTGTAATCCCAC
CAGCAGTGGAGGAGTATTCCTCTTTCTCCACATCCTCACCAGCATCTGAT
GTCACCTAAGGTTTTGATCTTAGCCATTATGACTGGTGTAGGGTTGGAAT
CTCAGGGTTGTTTTGATTTGAATTTCCCTGATGACTAAGAACATTTCTTT
AGGTGCTTCTCAGCCATTCGGTATTCCTTAGTTGAGAATTCTTTGTTTAG
CTCTGTACCCCATTTTTAATAGGATTACTTGGTTCTCTGGAGAATGGCCT
TGTTGGATTTCAATGGAGGAGAGGCTCTTGGTCCTGAGAAGGCTCAATGT
CCCAGTGTANGAGAATGCCAGGATAGGGAAGCAGGAGTANGTGGGTTGGT
GAGCAGGGGAATAGGGGGGGTGGGATANNNNNN

Query= MSMg01no548_a20.b1 MSMg01no548_a20.b1 CHROMAT_FILE:
MSMg01no548_a20.b1 PHD_FILE: MSMg01no548_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:52 2005
         (411 letters)



>mm_chr4_65500430_65501240
          Length = 811

 Score =  756 bits (391), Expect = 0.0
 Identities = 406/411 (98%), Gaps = 1/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctttgaaggtatattttgagatataaaacacatttattgttttgttacttctatgtata 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 755 gctttgaaggtatattttgagagataaaacacatttattgttttgttacttctatgtata 696

                                                                       
Query: 61  gcttttgatagttagtcacgttgtaggtaagaataggtttctgtttgttcttttgccctc 120
           ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 695 gctttcgatagttagtcacgttgtaggtaag-ataggtttctgttagttcttttgccctc 637

                                                                       
Query: 121 agcacctggaatgttggaggagggctgtctgtttgacaggactgagccaaatacctgagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 636 agcacctggaatgttggaggagggctgtctgtttgacaggactgagccaaatacgtgagt 577

                                                                       
Query: 181 gggaggcacagaagggagtattcctggcctttcctaccagtgttcaaactctccattctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gggaggcacagaagggagtattcctggcctttcctaccagtgttcaaactctccattctg 517

                                                                       
Query: 241 aatgctacagagaagcagttgcgtctttaagaatagaaagactactggtcgggtatagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatgctacagagaagcagttgcgtctttaagaatagaaagactactggtcgggtatagtg 457

                                                                       
Query: 301 attgctgtcctgtattcaaggcacgttgctttcctggcagattcgtcggggcctttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 attgctgtcctgtattcaaggcacgttgctttcctggcagattcgtcggggcctttctct 397

                                                              
Query: 361 ttttgtatcctgtgcatgtcttggtaaagtgctaagtgttttgtgctgtta 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttttgtatcctgtgcatgtcttggtaaagtgctaagtgttttgtgctgtta 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)