BAC Information

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BAC

Clone NameMSMg01-548H14
Chromosome4 (Build37)
Map Location 131,785,109 - 131,785,305
singlet/doubletsinglet
Overlap geneGmeb1
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903
Downstream geneRnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548H14.T7 (MSMg01no548_h14.b1)MSMg01-548H14.TJ (MSMg01no548_h14.g1)
ACCAG612811AG612812
length844725
length of high quality
(start - end)
221 (48 - 268)450 (76 - 525)
definitionCHROMAT_FILE: MSMg01no548_h14.b1 PHD_FILE: MSMg01no548_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:24 2005CHROMAT_FILE: MSMg01no548_h14.g1 PHD_FILE: MSMg01no548_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCAAATTTTACCACTTTACATACACTTCTTTCCACAGCTACT
TCACCCAGTTCTATGTGTTACTTTTGGTGTTTAGAGAAAAGGTCTTGATA
TGTAACCAGCTAGGCTTAAACCCCTGAGCCTCCACTTCCTGTGGACTGGG
ATTATATATATATATATATATATATATATATATATATATATATATATATA
TATATATAGAGAGAGAGAGAGAGAGAGAGAGATAATGTTGTTATATATAT
AGTATAGCCATTTTTACTTTCTTTTTTTTTTATTTTTCTTGGTGTGTTTT
TTTTTTTTCTATCGCGTTTTTTTTGTTCCACTATTTATTTCGCCTCATTT
TTTACTTGTGTGTTTTTTCTTGCGTTTTTTTTTCCCTCTTTGTTTTTGTT
ATTTTCCATATCATATATAATTCATCCTTTTGTCTTCTTTTTCTTTCTTA
TTTTTTTCTTCTATTTTTTTTTACACATATCCTTATATCTCTAACCACAT
ATCATCCCTTTTATTTTTCACTACATTTTCTCTCCAACTTTTTATCCAAT
TTTTTTTATTTTATACTCTTATCCTTATCATACTTCTTTTAATTCTTTAT
TCCTTCTCCGACAGGTTTTATCTCTCTCCATTTTCTAATTTTTGACCACA
ATCTACATTTATTGTATCATATATCTATCCCAATTATTACTCTCTTCACC
ACTTTACTTTATTATTATTTTACCCCCTTTTTGCTACCCTATATTCTCTT
TCAACCTCTCCAATTATACTAACTACCATTCTATCACCTTTATG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTTTTCCATTTTGCATTGCAA
ACTGATTGTTTTCTAATCAAGAAAATAATTGAAGCCGGGTGTGGTGGTGC
ACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTTGAG
TTCAAGGCCAACCTGGTTTGCAGAGTGAGTTCCAGGACAGCCAGGGATAC
ATTGTCTTGAAAAACAATCAAAAAATTTAAAAAATGATGGGGCTGGCGAG
ATGGCTCAGCAGTTAAGAGCACCAACTGCTCTTCTGAAGGTCCTGAGTTC
AAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGA
TGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAAC
AATAAATAAATCTTTTTTTAAAAATTTAAAAAAATTTTTAAATAAATAAA
TTTAAAAAAAAAATAGAAAAAGAAAAGTTCCCAGAATAGTGTAATTGTGG
ATATTTTATGTTTCCCTCTCCAGGAATGGAGGAATTATCCTTGCTGATTA
GAGGGTATTGCTAGATCTCCTGCCTTTCATTAATTTAGGTCAAAGCCTTA
AATCATAAATTCCTGGGGCTGGAAAGACGGCTCATTAATTAAAAATCCTT
CCAAGGTCCTGAGTTCATTTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_h14.b1 MSMg01no548_h14.b1 CHROMAT_FILE:
MSMg01no548_h14.b1 PHD_FILE: MSMg01no548_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:24 2005
         (221 letters)



>mm_chr4_131784905_131785525
          Length = 621

 Score =  350 bits (181), Expect = e-101
 Identities = 193/197 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaaattttaccactttacatacacttctttccacagctacttcacccagttc 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaaatcagaccactttacatacacttctttccacagctacttcacccagttc 264

                                                                       
Query: 65  tatgtgttacttttggtgtttagagaaaaggtcttgatatgtaaccagctaggcttaaac 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 tatgtgttacttttggtgtttagagaaaaggtcttgatatataaccagctaggcttaaac 324

                                                                       
Query: 125 ccctgagcctccacttcctgtggactgggattatatatatatatatatatatatatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctgagcctccacttcctgtggactgggattatatatatatatatatatatatatatat 384

                            
Query: 185 atatatatatatatata 201
           |||||||||||||||||
Sbjct: 385 atatatatatatatata 401



 Score = 89.7 bits (46), Expect = 1e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 166 tatatatatatatatatatatatatatatatatatatatatatata 211
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatatatatatatatatatatatatatatatatatatatatatata 356



 Score = 89.7 bits (46), Expect = 1e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 164 tatatatatatatatatatatatatatatatatatatatatatata 209
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatatatatatatatatatatatatatatatatatatatatatata 356



 Score = 89.7 bits (46), Expect = 1e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 162 tatatatatatatatatatatatatatatatatatatatatatata 207
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatatatatatatatatatatatatatatatatatatatatatata 356



 Score = 89.7 bits (46), Expect = 1e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 160 tatatatatatatatatatatatatatatatatatatatatatata 205
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatatatatatatatatatatatatatatatatatatatatatata 356



 Score = 89.7 bits (46), Expect = 1e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 158 tatatatatatatatatatatatatatatatatatatatatatata 203
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatatatatatatatatatatatatatatatatatatatatatata 356



 Score = 89.7 bits (46), Expect = 1e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 156 tatatatatatatatatatatatatatatatatatatatatatata 201
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatatatatatatatatatatatatatatatatatatatatatata 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 13
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)