Query= MSMg01no548_p07.b1 MSMg01no548_p07.b1 CHROMAT_FILE:
MSMg01no548_p07.b1 PHD_FILE: MSMg01no548_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:01 2005
(528 letters)
>mm_chr4_113770614_113771541
Length = 928
Score = 412 bits (213), Expect = e-119
Identities = 300/333 (90%), Gaps = 17/333 (5%)
Strand = Plus / Minus
Query: 200 tggctgtttacctggtcctcagttccatgtgaccacctgtcttccactctctggtgcaaa 259
|||||||||||| |||| || |||||||||| ||||||||||| ||||||||||||||
Sbjct: 928 tggctgtttaccaggtcttccgttccatgtg---acctgtcttcctctctctggtgcaaa 872
Query: 260 ttctctcctgcatctgtttctcccccagaatcatcttt-tagtgtaccaaaacttctacc 318
||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 871 ttctctcctgcatttgtttctcccccagaatcttctttct-gtgtaccaaaacttctacc 813
Query: 319 tccttattttctgccaaagctaaat-ggccaacaacagttttattgttaggtcattcttc 377
||||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||
Sbjct: 812 tccttattttctgcccaagctaa-taggccaacaacagttttattgttaggttattcttc 754
Query: 378 cataaaata-caacacattctttctacactccagagaaggtataaatgtgagatccatga 436
|| |||||| || ||||||||||| || |||||||||||||||||||| | ||||
Sbjct: 753 cagaaaatatca-cacattctttc--ca----agagaaggtataaatgtgaggtttatga 701
Query: 437 aagggtctgtagtggttattactctgtctggtgctgcccctgctgctggttgttcctgat 496
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct: 700 aagggtctgtagtggttattgctctgtctggtgctgcccctgctgctggttgttcttgct 641
Query: 497 cctatttttgttactgctgg-ttttctggattg 528
||||||||||||| || ||| ||||||||||||
Sbjct: 640 cctatttttgttattg-tgggttttctggattg 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_p07.g1 MSMg01no548_p07.g1 CHROMAT_FILE:
MSMg01no548_p07.g1 PHD_FILE: MSMg01no548_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:01 2005
(539 letters)
>mm_chr4_113610684_113611626
Length = 943
Score = 617 bits (319), Expect = 0.0
Identities = 469/547 (85%), Gaps = 56/547 (10%)
Strand = Plus / Plus
Query: 1 tcctacatcattgtgaacacttgattttgtagcatgaggaataagcttagatatagctct 60
|||||||| |||||||||| |||||||||| |||||||||||| || |||||||
Sbjct: 208 tcctacattattgtgaacatttgattttgt-------ggaataagcttatatttagctct 260
Query: 61 aactttctgactggtaattcacaagaattagttcctttctctgataaattttcataccaa 120
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 aactttatgactggtaattcacaagaattagttcctttctatgataaattttcataccaa 320
Query: 121 ataacacaatgagctcaaagtggaatttggccagcctaccagac----agtagcaaattt 176
||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||
Sbjct: 321 ataacacaatgagctcaaactggaatttggccagcctaccagtcagttagtagcaaaatt 380
Query: 177 ttacatgattaaatttgtttgagaccttttctgtgtcatccatcttcattattcttcct- 235
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ttgcatgattaaatttgtttgagaccttttctgtgtcatccatcttcattattctt--tt 438
Query: 236 -gtttagtgaatgtcaaatatgcttagatcct-atattttctaaactgcaacccaatctc 293
||||||||||| ||||||||||||| || || |||||||||||| |||| | |||||||
Sbjct: 439 ggtttagtgaatatcaaatatgcttaaat-ctcatattttctaaagtgcagcacaatctc 497
Query: 294 caaagtttgggttaattaaaattacattaaaatatcttgtttgtaattcacaaatgacaa 353
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 498 caaagtttgtgttaattaaaattacattaaaatatcttgtttgtgattcacaaatgacaa 557
Query: 354 aagattatatatatatatgtatatatatatacatatatataatatatatatatgtatata 413
||||| || ||||||||| ||||||||||| |||||||| |||||||| ||
Sbjct: 558 aagat-at-tatatatat--atatatatata--tatatata-tatatata---gt----- 602
Query: 414 tatacatatatataatatatatatattcaatgaaggtatatataaattaacaaatatttc 473
||||||||||||||||| |||| ||||||||||||||
Sbjct: 603 -----------------------tattcaatgaaggtataaataacttaacaaatatttc 639
Query: 474 aattatcttccttattaatatatacatatctgtgtactattgtttacatatacacaca-a 532
|||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct: 640 aattatcttcctcattaatatatacatatatgtgtactattgtttacatatacatacata 699
Query: 533 atttata 539
|||||||
Sbjct: 700 atttata 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 943
Length adjustment: 10
Effective length of query: 529
Effective length of database: 933
Effective search space: 493557
Effective search space used: 493557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
