BAC Information

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BAC

Clone NameMSMg01-548P11
Chromosome4 (Build37)
Map Location 118,761,993 - 118,929,812
singlet/doubletdoublet
Overlap geneSlc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833
Downstream geneYbx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548P11.T7 (MSMg01no548_p11.b1)MSMg01-548P11.TJ (MSMg01no548_p11.g1)
ACCAG613186AG613187
length754722
length of high quality
(start - end)		355 (47 - 401)468 (74 - 541)
definitionCHROMAT_FILE: MSMg01no548_p11.b1 PHD_FILE: MSMg01no548_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:31:02 2005CHROMAT_FILE: MSMg01no548_p11.g1 PHD_FILE: MSMg01no548_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:31:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,929,462 - 118,929,812)(118,761,993 - 118,762,460)
sequence
CACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGTGTTACCAGGGTAGCGTACCAGGAGACAGCAGTCAAAGTAC
AGAGACCTAAAGAACCAAGTAGGGAAGCTCAGCTCTGCCTGGGCCGGCCA
GCCACAAAAGCTGGGCTAGCTGCATAGTCAAGAGGGGAGAGGAAGCTGGG
CACTCACCAGCCAAGAGGAAGAGAGCACCTCCGGAGATGGCCACACGGCT
CTTGGCAGTGGGGTTACTGTCTCCAACCCGAGTGCACTTCATGCCCACGA
CACTGAGCACCATGGCCACAAAGCCCATGAGCACAGCCACGACCATCATG
GCTCGTGCTGACTGGATATGACCTGAGGCAGGTTAAGAAAGGTCTGAGCA
CGAGTGGGGAGCTCGGACAGGGGTATTGGGGTGGTGGGGTTGTATGTTTT
CTCTATTCTCCCTTTTTTTGTACCGATTTTGCCATACGTTTCGCTTATTA
TCACCGCTTATTTAAATTCTACATCCAATTATTTATCATTATTTCACATT
CAAGTATGTGTTATGTTTTTGTCTTCCCTTATTATTGATTTTAGTCGTTA
ATTAATTCCTATTTTGTTTTTCCTACCACTTTTAATTCTCTCTCACCCAT
AGTAAGCGTGAACGTAATAGATTCTTCGAATCCATTTTTATATCTTTCAT
CTTTTTCGTCTCTCTATTCGATCGGCAATTTATATTAGACGACCAAATTT
TTTG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTTGCTTTCCTTCCTCATGTTGGTC
ACTGTTCATCATTGCCTAAGCAGAGTTGTCTGGACTGCCACTCCTTTGGT
CTATTTTGGTTTTTTTAGACTGTTTCAGTTAGTGTATGCCTAGTCTCAAT
GCCTTCCTGAGCAGAAGTTCATGGCCCTGTCATTGACACTGGGATTAGTT
GAGAAGTGTTGGGGTTGGCTCTGAGCTGGAGCTATGAGATTTTCTGTCTG
TCGTCTGTCTGTCTGCCTACCTGTCTGTTCTCATCCTTCTCAACAGTTGG
AACACTTAGCTACAAAGATCCGAGGGGTCAGCCCCATTGTGCTGTCAAGC
TGTCAGGGACTGAGTGCTAAGAGGTCTGCAGTCAGATGAAGGAGACCATC
AGCATGGTTACAGGAAGCCAGGTCTACCCCATCTCATAATGTCACCAAGG
GAATGACACCTCAGGGACTGCCCACTTCCTCCCCAGTATCCTACAGTGGT
CAGAATGTAGTCACCTGACAGTTTTAACCTCACCACCTACCAACAGAGTA
TGGGGCCTGGAAAGGCGATGCAACTTTCCTAGTGATGGGCTATGAGAAGG
AAGAACTAGGAACTTCCAGAGTCCCTGAGACTGACAGGCCAAGAATGATT
CCTGGGAACCCTCTTAGCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_p11.b1 MSMg01no548_p11.b1 CHROMAT_FILE:
MSMg01no548_p11.b1 PHD_FILE: MSMg01no548_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:02 2005
         (355 letters)



>mm_chr4_118929258_118930012
          Length = 755

 Score =  625 bits (323), Expect = 0.0
 Identities = 344/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtgttaccagggtagcgtaccaggagacagcagtcaaagtacagagacctaa 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 555 gaattcctgtgttaccagggtagcataccaggagacagcagtcaaagtacagagacctaa 496

                                                                       
Query: 65  agaaccaagtagggaagctcagctctgcctgggccggccagccacaaaagctgggctagc 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 agaaccaagtagggaagctcagctctgcctgggccggccagccgcaaaagctgggctagc 436

                                                                       
Query: 125 tgcatagtcaagaggggagaggaagctgggcactcaccagccaagaggaagagagcacct 184
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 435 cacatagtcaagaggggagaggaagctgggcactcacctgccaagaggaagagagcacct 376

                                                                       
Query: 185 ccggagatggccacacggctcttggcagtggggttactgtctccaacccgagtgcacttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccggagatggccacacggctcttggcagtggggttactgtctccaacccgagtgcacttc 316

                                                                       
Query: 245 atgcccacgacactgagcaccatggccacaaagcccatgagcacagccacgaccatcatg 304
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 315 atgcccacgacactgagcaccatggccacaaagcccaggagcacagccacgaccatcagg 256

                                                              
Query: 305 gctcgtgctgactggatatgacctgaggcaggttaagaaaggtctgagcac 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gctcgtgctgactggatatgacctgaggcaggttaagaaaggtctgagcac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_p11.g1 MSMg01no548_p11.g1 CHROMAT_FILE:
MSMg01no548_p11.g1 PHD_FILE: MSMg01no548_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:02 2005
         (468 letters)



>mm_chr4_118761793_118762660
          Length = 868

 Score =  874 bits (452), Expect = 0.0
 Identities = 464/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttgctttccttcctcatgttggtcactgttcatcattgcctaagcagagttgtctgg 60
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 accttgctttccttccttatgttggtcactgtttatcattgcctaagcagagttgtctgg 260

                                                                       
Query: 61  actgccactcctttggtctattttggtttttttagactgtttcagttagtgtatgcctag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 261 actgccactcctttggtctattttggtttttttagactgtttcagttagtgtacacctag 320

                                                                       
Query: 121 tctcaatgccttcctgagcagaagttcatggccctgtcattgacactgggattagttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaatgccttcctgagcagaagttcatggccctgtcattgacactgggattagttgag 380

                                                                       
Query: 181 aagtgttggggttggctctgagctggagctatgagattttctgtctgtcgtctgtctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgttggggttggctctgagctggagctatgagattttctgtctgtcgtctgtctgtc 440

                                                                       
Query: 241 tgcctacctgtctgttctcatccttctcaacagttggaacacttagctacaaagatccga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctacctgtctgttctcatccttctcaacagttggaacacttagctacaaagatccga 500

                                                                       
Query: 301 ggggtcagccccattgtgctgtcaagctgtcagggactgagtgctaagaggtctgcagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggtcagccccattgtgctgtcaagctgtcagggactgagtgctaagaggtctgcagtc 560

                                                                       
Query: 361 agatgaaggagaccatcagcatggttacaggaagccaggtctaccccatctcataatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgaaggagaccatcagcatggttacaggaagccaggtctaccccatctcataatgtc 620

                                                           
Query: 421 accaagggaatgacacctcagggactgcccacttcctccccagtatcc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaagggaatgacacctcagggactgcccacttcctccccagtatcc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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