Query= MSMg01no548_p14.b1 MSMg01no548_p14.b1 CHROMAT_FILE:
MSMg01no548_p14.b1 PHD_FILE: MSMg01no548_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:03 2005
(406 letters)
>mm_chr4_64953754_64954559
Length = 806
Score = 770 bits (398), Expect = 0.0
Identities = 404/406 (99%)
Strand = Plus / Plus
Query: 1 aatctcatagctttcctttttgcagctttccttgagctttctgattgctaggtaatttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctcatagctttcctttttgcagctttccttgagctttctgattgctaggtaatttgt 260
Query: 61 aacaacttaggactctgtctattttcttttgagtcttcccttataaattttctgcctaca 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 aacaacttaggactctgtctattttcttttgagccttcccttataaattttctgcctaca 320
Query: 121 atgccttccatgaccagattcaaaatcaactccttcaggatttgttcccgtgagaatgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgccttccatgaccagattcaaaatcaactccttcaggatttgttcccgtgagaatgtc 380
Query: 181 cctgtcactgtgccactaaaatatgtcatgtatcctttcttttccagcactggaaattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtcactgtgccactaaaatatgtcatgtatcctttcttttccagcactggaaattat 440
Query: 241 ttcaaaaatagagtgtgagcttctggagcagattcaatctttgcattcctgctttctctt 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaacaatagagtgtgagcttctggagcagattcaatctttgcattcctgctttctctt 500
Query: 301 ccactaccacccaagcacatggatggtaaaggttcattaacttttactgaattctcagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccactaccacccaagcacatggatggtaaaggttcattaacttttactgaattctcagca 560
Query: 361 cccttgaaaactctatcttttcctccatcttttttccaggtgtgtc 406
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccttgaaaactctatcttttcctccatcttttttccaggtgtgtc 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_p14.g1 MSMg01no548_p14.g1 CHROMAT_FILE:
MSMg01no548_p14.g1 PHD_FILE: MSMg01no548_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:03 2005
(571 letters)
>mm_chr4_65095064_65096034
Length = 971
Score = 1081 bits (559), Expect = 0.0
Identities = 568/571 (99%), Gaps = 2/571 (0%)
Strand = Plus / Minus
Query: 1 actcccagcttcatttggtaagacaaaggaaataggaggcttgtttgttgttgttgttgt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 586 actcccagcttcatttggtaagacaaaggaaataggaggc-tgtttgttgttgttgttgt 528
Query: 61 tgttgttgtttgtttttgtttttgtttttttatttgtttccaatcctctatgaatatggc 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 527 tgttgttgtttgtttttgtttttg-ttttttatttgtttccaatcctctatgaatatggc 469
Query: 121 cacatctggaagcaggcatcataaataacaataaggagctctagacacctgctcattata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cacatctggaagcaggcatcataaataacaataaggagctctagacacctgctcattata 409
Query: 181 ttgttaatgatgaagtcacaggtcacctccttttattcctttagaaagctgtaattggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttgttaatgatgaagtcacaggtcacctccttttattcctttagaaagctgtaattggtg 349
Query: 241 aggtgctaagcttttcaacaattactcaaatacttcttttatttgcatcatttatttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aggtgctaagcttttcaacaattactcaaatacttcttttatttgcatcatttatttatt 289
Query: 301 catctactcaactattaacctaacctctatttatctcttctgtctcttcttccacttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 catctactcaactattaacctaacctctatttatctcttctgtctcttcttccacttatc 229
Query: 361 tatgcatataattcatccacctatttatatactcttacgctgaactctcttttcactccc 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 228 tatgcatataattcatccacctatttatatactcttacactgaactctcttttcactccc 169
Query: 421 actttttctaaggattatttttatgtcttcatactgcactatggccttcttggttatgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 actttttctaaggattatttttatgtcttcatactgcactatggccttcttggttatgcc 109
Query: 481 tatgtctgatacaaaggagcctatcctcagatgacttacaacctaacagtgataagaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tatgtctgatacaaaggagcctatcctcagatgacttacaacctaacagtgataagaaag 49
Query: 541 gctatatatttgtaatttgggtatatttagt 571
|||||||||||||||||||||||||||||||
Sbjct: 48 gctatatatttgtaatttgggtatatttagt 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
