Query= MSMg01no548_p21.b1 MSMg01no548_p21.b1 CHROMAT_FILE:
MSMg01no548_p21.b1 PHD_FILE: MSMg01no548_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:04 2005
(644 letters)
>mm_chr4_83297883_83298926
Length = 1044
Score = 1009 bits (522), Expect = 0.0
Identities = 534/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 108 aattaaatttgcct-aaaaaatgttgacaccataaggtttccttgaagcattaattatgc 166
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 aattaaatttgcctaaaaaaatgttgacaccataaggtttccttgaagcattaattatgc 985
Query: 167 tttattgtcctaccaatatccattataaagtgagtgtctatccttaacatgatgaaacac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 tttattgtcctaccaatatccattataaagtgagtgtctatccttaacatgatgaaacac 925
Query: 227 ttacaagaaaggatggggacagtaggggaaggtggaccggaagagggagtgggcagggaa 286
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 924 ttacaagaaaggatggggacagtaggggaaggtgggcaggaagagggagtgggcagggaa 865
Query: 287 ggaagggaagtgaagggaagccgatctcaccaaataatcactgctccacaaacggaaact 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ggaagggaagtgaagggaagccgatctcaccaaataatcactgctccacaaacggaaact 805
Query: 347 taatatgcaattaaaaccacccatcggaggtttaaaaatcccaccaggaacaataaaaaa 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 804 taatatgcaattaaaaccacccatcggaggtttaaaaatcccaccaggaacaataaaata 745
Query: 407 aaatatttagaacagtggtgataattggctttttcaaaagttaagtttaaaattaaaaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaatatttagaacagtggtgataattggctttttcaaaagttaagtttaaaattaaaaaa 685
Query: 467 aatagctacaacaaatagaattactgagtaaattataacatacacataaacagagaaaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatagctacaacaaatagaattactgagtaaattataacatacacataaacagagaaaaa 625
Query: 527 acttcttacaaataagttatttgtacatactgacttgatcttcatgatcggttttataac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acttcttacaaataagttatttgtacatactgacttgatcttcatgatcggttttataac 565
Query: 587 taagaaaaataagcttaagatcactgtgaataacttaataccggcttttatagtaaca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taagaaaaataagcttaagatcactgtgaataacttaataccggcttttatagtaaca 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_p21.g1 MSMg01no548_p21.g1 CHROMAT_FILE:
MSMg01no548_p21.g1 PHD_FILE: MSMg01no548_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:04 2005
(565 letters)
>mm_chr4_83109683_83110647
Length = 965
Score = 1042 bits (539), Expect = 0.0
Identities = 554/565 (98%), Gaps = 10/565 (1%)
Strand = Plus / Plus
Query: 1 aaggccagccaggtctgcagagcaagtcagccaggttgaaattacaatggataaagatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagccaggtctgcagagcaagtcagccaggttgaaattacaatggataaagatta 260
Query: 61 aagtttaatgtataaatgcacctcttgtgtctttgatcacagacatctgggttatctaca 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtttaatgtataaatgcaccttttgtgtctttgatcacagacatctgggttatctaca 320
Query: 121 acgtgtctatatagctggagtactggaagtttacctatgttctagaaattaattatacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtgtctatatagctggagtactggaagtttacctatgttctagaaattaattatacta 380
Query: 181 taaaatataaagtatttttcatataaactgtatacatttcagttatgtaatatattaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaatataaagtatttttcatataaactgtatacatttcagttatgtaatatattaaaa 440
Query: 241 catattaaaacataaataataaagaaacccataaatcttttaatatttgttaaaggttat 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cata----------aataataaagaaacccataaatcttttaatatttgttaaaggttat 490
Query: 301 ttatacatattataatatgtatatctaggaaataaatttacaatgtaattggggaaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttatacatattataatatgtatatctaggaaataaatttacaatgtaattggggaaataa 550
Query: 361 ccccatggattaaatgcttcttgtccaagaatgaggacctgccttcagatccctagcatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccccatggattaaatgcttcttgtccaagaatgaggacctgccttcagatccctagcatc 610
Query: 421 cccatagaagttgagtatggctgcatatatctgtacttgaggtggcagggtagataagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cccatagaagttgagtatggctgcatatatctgtacttgaggtggcagggtagataagct 670
Query: 481 aactaacttcagatggggtaataagcagtctagcttcagattcattgagaccctgtctca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aactaacttcagatggggtaataagcagtctagcttcagattcattgagaccctgtctca 730
Query: 541 aaatgtaaaagtggtggggcccaat 565
|||||||||||||||||||||||||
Sbjct: 731 aaatgtaaaagtggtggggcccaat 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
