BAC Information

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BAC

Clone NameB6Ng01-001A19
Chromosome5 (Build37)
Map Location 57,405,452 - 57,516,073
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335
Downstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A19.bB6Ng01-001A19.g
ACCDH839477DH839478
length8591,106
definitionDH839477|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A19, 5' end.DH839478|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,405,452 - 57,406,310)(57,514,955 - 57,516,073)
sequence
gaattctgaacttcactgttttgaggagcacataactcagttaaaggtca
atattgtcagctctcattgcttttattttagcctgtgaaatgtcactgaa
tttctcagaaggaatggagaaaatatgaattcttattgtgctgaagaatg
gaaagatgaaagcaaggtattttctgaaggaggtccagtgctttcagggt
tgtgctattatcataattgaatgactctccctagaggcaaggatgcagga
tggccttcatttctaagcaaaactgaaacttcatccattaatatgtcttg
gcctaataattattaaaataaagtgtgtgtgtctatgtgtgtttcagcat
tacaactaatacttagtatgctctcgtattttctgctcttggacagtaaa
agccttgtccttataattatgatttgtagagaaaaccagtatgttctatg
atggcatccatattagttttattacttccacgaaagttttaggctcaagg
aatatatagagattgggagatttaataggtgagaaggggcacatttaagt
gttcgaaagtatcaaaatctgaagggtaatataattttagcagagatagt
gctttaaacaatagaatactattgggaaaaattaatttattataacaatg
tactaaatgatagacctgccttatagtgaaaggagagacctaagcaggag
ttaggaaaagatctgaaagatagaacacctgatattgaacccagacacta
ttgcatatgccagaaagattttgctgaagggaccctgttatagctgtctc
ttgtgaggctatgccagtgcctggcaaatacagaagttgattcacaaagt
catctataa
gaattccactatagatctctatagacagatgaagatacaacattaatgcc
attttaaatacatattctgaatacttatgtatttaaatatataacacata
taattttaaaaatatattttatataacatataacagatatataaatatat
ttatatatacatagatatatatttatatgtcacatataaatatatatatt
tgtatgtagttctacacatactattaacgaagaatactgtaaagcagtga
gccatgatacaccaatttttgttttattaattattaagtaagtgtgtttt
atgcattgatgaaaacagttgaaaatgtgttcaagtatgaattcaaaact
gttaaaaaactaattttgctttcaagcaaattctgcaggttgtccatata
aaatcatctaataatagaacatctgtaaataagtattataggaataaata
ataacgttaatgttaataataataaaatatctacaaagaaagattttcaa
ttatcatattttattcaaagatgacatggtggacataagaaaaaataaaa
tatcaaacacgctattgactatcttacaagataaaacaaagaaaaggtca
tgactgctttttaagtgaagggcctaatttaacattacaaactgtatttt
tctttcagactccattttatgattatgttgccctctgaatgaacccagct
actggaaaaaccccaacttgttccaggaaccatgtcaccctagtaacaat
cacaattcgaagcaaatagtgactccaccactagcaactatcactttatt
tatttatttatttatttatttatttatttattatttgatattttctttat
ttacatttcaaatgctatcctgaaagttccctataccctccacccactct
gcttccttacccacccactcccacttgttggccctggtattcacctgtac
tggggcataataaagtttgcagactatgggtctaggcactggcatagtcc
tcacagagacagctgtatcaggtctttcagcaaatctgctagaatatgca
aagagtctgggtttggtgctgattatggatgaatcctggctggggggtaa
tctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57405452_57406310
seq2: B6Ng01-001A19.b_42_900

seq1  GAATTCTGAACTTCACTGTTTTGAGGAGCACATAACTCAGTTAAAGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTTCACTGTTTTGAGGAGCACATAACTCAGTTAAAGGTCA  50

seq1  ATATTGTCAGCTCTCATTGCTTTTATTTTAGCCTGTGAAATGTCACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCAGCTCTCATTGCTTTTATTTTAGCCTGTGAAATGTCACTGAA  100

seq1  TTTCTCAGAAGGAATGGAGAAAATATGAATTCTTATTGTGCTGAAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGAAGGAATGGAGAAAATATGAATTCTTATTGTGCTGAAGAATG  150

seq1  GAAAGATGAAAGCAAGGTATTTTCTGAAGGAGGTCCAGTGCTTTCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGAAAGCAAGGTATTTTCTGAAGGAGGTCCAGTGCTTTCAGGGT  200

seq1  TGTGCTATTATCATAATTGAATGACTCTCCCTAGAGGCAAGGATGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATTATCATAATTGAATGACTCTCCCTAGAGGCAAGGATGCAGGA  250

seq1  TGGCCTTCATTTCTAAGCAAAACTGAAACTTCATCCATTAATATGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCATTTCTAAGCAAAACTGAAACTTCATCCATTAATATGTCTTG  300

seq1  GCCTAATAATTATTAAAATAAAGTGTGTGTGTCTATGTGTGTTTCAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATAATTATTAAAATAAAGTGTGTGTGTCTATGTGTGTTTCAGCAT  350

seq1  TACAACTAATACTTAGTATGCTCTCGTATTTTCTGCTCTTGGACAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTAATACTTAGTATGCTCTCGTATTTTCTGCTCTTGGACAGTAAA  400

seq1  AGCCTTGTCCTTATAATTATGATTTGTAGAGAAAACCAGTATGTTCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTCCTTATAATTATGATTTGTAGAGAAAACCAGTATGTTCTATG  450

seq1  ATGGCATCCATATTAGTTTTATTACTTCCACGAAAGTTTTAGGCTCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATCCATATTAGTTTTATTACTTCCACGAAAGTTTTAGGCTCAAGG  500

seq1  AATATATAGAGATTGGGAGATTTAATAGGTGAGAAGGGGCACATTTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGAGATTGGGAGATTTAATAGGTGAGAAGGGGCACATTTAAGT  550

seq1  GTTCGAAAGTATCAAAATCTGAAGGGTAATATAATTTTAGCAGAGATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAAAGTATCAAAATCTGAAGGGTAATATAATTTTAGCAGAGATAGT  600

seq1  GCTTTAAACAATAGAATACTATTGGGAAAAATTAATTTATTATAACAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAACAATAGAATACTATTGGGAAAAATTAATTTATTATAACAATG  650

seq1  TACTAAATGATAGACCTGCCTTATAGTGAAAGGAGAGACCTAAGCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATGATAGACCTGCCTTATAGTGAAAGGAGAGACCTAAGCAGGAG  700

seq1  TTAGGAAAAGATCTGAAAGATAGAACACCTGATATTGAACCCAGACACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAAGATCTGAAAGATAGAACACCTGATATTGAACCCAGACACTA  750

seq1  TTGCATATGCCAGAAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATGCCAGAAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTC  800

seq1  TTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGT  850
      ||||||||||||||||||||||||||||||||||||| ||| | || |||
seq2  TTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTTGATTCACAAAGT  850

seq1  CATCTATAA  859
      |||||||||
seq2  CATCTATAA  859

seq1: chr5_57514955_57516073
seq2: B6Ng01-001A19.g_65_1170 (reverse)

seq1  CAGAGATTACCCCACCCAGCCCAGGGATCCATCCCATAATCAGCCACCAA  50
      ||||||||||||  |||||||   |||| ||| |||||||||| ||||||
seq2  CAGAGATTACCC--CCCAGCC--AGGATTCAT-CCATAATCAG-CACCAA  44

seq1  ACCCAGACTCTTTTGCATATTCTAGCAAGATTTTGCTGAAAGGACCCTGA  100
      |||||||||| ||||||||||||||| ||| |||||||||||   |||||
seq2  ACCCAGACTC-TTTGCATATTCTAGC-AGA-TTTGCTGAAAG--ACCTGA  89

seq1  TACAGCTGTCTCTTGTGAGG-CTATGCCAGTGCCTAGGCCCCTAGTTCTT  149
      |||||||||||| ||||||| |||||||||||||||| ||| ||||   |
seq2  TACAGCTGTCTC-TGTGAGGACTATGCCAGTGCCTAGACCCATAGT--CT  136

seq1  GCAAACTTTA-TATGCCCCAGTACAGGTGAATACCAGGGCCAAGAAGTGG  198
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  GCAAACTTTATTATGCCCCAGTACAGGTGAATACCAGGGCCAACAAGTGG  186

seq1  GAGTGGGTGGGTAAGGAAGCAGAGTGGGTGGAGGGTATAGGGAACTTTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTGGGTAAGGAAGCAGAGTGGGTGGAGGGTATAGGGAACTTTCA  236

seq1  GGATAGCATTTGAAATGTAAATAAAGAAAATATCAAATAAATAAATAAAT  298
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGATAGCATTTGAAATGTAAATAAAGAAAATATCAAAT-AATAAATAAAT  285

seq1  AAATAAATAAATAAATAAATAAATAAAGTGATAGTTGCTAGTGGTGGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAAGTGATAGTTGCTAGTGGTGGAGT  335

seq1  CACTATTTGCTTCGAATTGTGATTGTTACTAGGGTGACATGGTTCCTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTGCTTCGAATTGTGATTGTTACTAGGGTGACATGGTTCCTGGA  385

seq1  ACAAGTTGGGGTTTTTCCAGTAGCTGGGTTCATTCAGAGGGCAACATAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGGGGTTTTTCCAGTAGCTGGGTTCATTCAGAGGGCAACATAAT  435

seq1  CATAAAATGGAGTCTGAAAGAAAAATACAGTTTGTAATGTTAAATTAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATGGAGTCTGAAAGAAAAATACAGTTTGTAATGTTAAATTAGGC  485

seq1  CCTTCACTTAAAAAGCAGTCATGACCTTTTCTTTGTTTTATCTTGTAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTTAAAAAGCAGTCATGACCTTTTCTTTGTTTTATCTTGTAAGA  535

seq1  TAGTCAATAGCGTGTTTGATATTTTATTTTTTCTTATGTCCACCATGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATAGCGTGTTTGATATTTTATTTTTTCTTATGTCCACCATGTCA  585

seq1  TCTTTGAATAAAATATGATAATTGAAAATCTTTCTTTGTAGATATTTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAATAAAATATGATAATTGAAAATCTTTCTTTGTAGATATTTTAT  635

seq1  TATTATTAACATTAACGTTATTATTTATTCCTATAATACTTATTTACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAACATTAACGTTATTATTTATTCCTATAATACTTATTTACAGA  685

seq1  TGTTCTATTATTAGATGATTTTATATGGACAACCTGCAGAATTTGCTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATTATTAGATGATTTTATATGGACAACCTGCAGAATTTGCTTGA  735

seq1  AAGCAAAATTAGTTTTTTAACAGTTTTGAATTCATACTTGAACACATTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATTAGTTTTTTAACAGTTTTGAATTCATACTTGAACACATTTT  785

seq1  CAACTGTTTTCATCAATGCATAAAACACACTTACTTAATAATTAATAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTTTCATCAATGCATAAAACACACTTACTTAATAATTAATAAAA  835

seq1  CAAAAATTGGTGTATCATGGCTCACTGCTTTACAGTATTCTTCGTTAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTGGTGTATCATGGCTCACTGCTTTACAGTATTCTTCGTTAATA  885

seq1  GTATGTGTAGAACTACATACAAATATATATATTTATATGTGACATATAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTAGAACTACATACAAATATATATATTTATATGTGACATATAAA  935

seq1  TATATATCTATGTATATATAAATATATTTATATATCTGTTATATGTTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCTATGTATATATAAATATATTTATATATCTGTTATATGTTATA  985

seq1  TAAAATATATTTTTAAAATTATATGTGTTATATATTTAAATACATAAGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATATTTTTAAAATTATATGTGTTATATATTTAAATACATAAGTA  1035

seq1  TTCAGAATATGTATTTAAAATGGCATTAATGTTGTATCTTCATCTGTCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATATGTATTTAAAATGGCATTAATGTTGTATCTTCATCTGTCTA  1085

seq1  TAGAGATCTATAGTGGAATTC  1119
      |||||||||||||||||||||
seq2  TAGAGATCTATAGTGGAATTC  1106