BAC Information

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BAC

Clone NameB6Ng01-001J01
Chromosome5 (Build37)
Map Location 130,612,272 - 130,798,134
singlet/doubletdoublet
Overlap geneKctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1
Upstream geneGpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1
Downstream geneA330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001J01.bB6Ng01-001J01.g
ACCDH839849DH839850
length1,129994
definitionDH839849|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J01, 5' end.DH839850|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,612,272 - 130,613,411)(130,797,144 - 130,798,134)
sequence
gaattcactatgtagatcaggccagcatggaactcgcagagatctgcctg
cctctgcctccagagcacagtggttagagtgcatggcctcatgctcagtc
acctagggacattttctgtaacttatttcagaggcctgctgccattcatt
tatgagtcctgttccagttggttctggcgtcctgtgtctaaggtcaaaga
tgctacttttttgccgtaagtcattattgtggaacacagaatagcggaga
taatacatagtaaccacaagtatcgattatgtttcctctgccaggtacag
ggcaagatattttatgtggcgttccggtttcacatctgcagccggtttgg
tcatatccgcgtcactaactaaagtcccttctgccctgtcactcagccag
acacataaaggtcactctctttccgtccgtgcatatacaagaatacaaga
cctttgatcccaccgtcaaatatttgttgaatttatccatttaacctcca
gctcctctgtcccaaccctaatcaaagacttcgccctctgtgaagacacc
attacagtaaataatctcagcagacgcaccagtcccactcttgccctggc
ctcctctccttgggagtggagaccaccatctcctgcgatccagccccagt
tctcggctccatccctccataggcctctgtacattgtttctttccctagg
atgtcttcccctctgctcctgacctggtagctgcctctctgtcctgaggt
ctctgcaagtccagtgtcctctggaagattctcctagctcttcttctaaa
accagacacctgtgctagtttcctttgcattgctgtgaccaagatagttg
agagaaacaacttcataggaagaaaagctgcttgtggcttacagtccatc
acggagggaagcgagggaaagtggctgtcgcgtctggttgcccaggaagc
agagtgtcatggtttgacaggaaatgttagtgatcccccaaaacacaccc
aggagtcgatctgatgcaactcacagcagggtctttattctagtcaagct
cccacaacgtacaacgtcacaaggacagtttggtgtgtggtggggcctga
atgtcatcggcaaggcttattgtaagcag
gaattcaagggatgcaagcatgagaatgtaagtttggatccccagaactc
aaataaaaagccaggcatggccacacacatctgtgaccccaggagtggag
taggggttggaggatgggcagagataggatcgctgctgtgtcactgactg
ccagcctcactccagcttcattgtaagtacttgtcacaaggcaataaggt
agagagtgacacagcacgacacctgatgtcctcccctggcctccacagac
agcaggacacttgcccccctcccacacactcacaaagatacaccactcaa
atgtacatcacacgcttacacaccaaaactaaactaagtcagccccaaca
ggaaaggctccatgccagcaaagaccacttacagaatagaaggaaggcaa
tattccacttaaacatctctataaaaacctaaccattcacttaggaaatt
acatgcaagagatgaaacttaaacaaaacacttttctgagagacctaaag
caaactctgcctctctctacctccatggaaagcaggatttataaaccgag
agggatttataagtcctttgaacacaacctgatgaggcccctaacagtag
agacattactcagcacttgctgtgtgccagatgctgttacgagtatttgt
gtctttccaaggctataaaatctatatgtacatcagaaggaatctttagc
agatgtgtgactgtttattttcacttgacaaaacacgagatccaggctca
gagagggtaaaaatgccaaaagccacacagtagtagagcaggtgatctgg
gacgtgatcgccagcaacaggaatcctagcaactgggcttgcgtgtattc
tcgctctgcttcttgtgtctgtcagtctgtctctgtgtgtctgcttttct
ctctgtgtgtctgtcagtctctattagttacacttttgttaaactgagat
aaatacccataggaattaagaccactggactttatttggtggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_130612272_130613411
seq2: B6Ng01-001J01.b_45_1173

seq1  GAATTCACTATGTAGATCAGGCCAGCATGGAACTCGCAGAGATCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGATCAGGCCAGCATGGAACTCGCAGAGATCTGCCTG  50

seq1  CCTCTGCCTCCAGAGCACAGTGGTTAGAGTGCATGGCCTCATGCTCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCAGAGCACAGTGGTTAGAGTGCATGGCCTCATGCTCAGTC  100

seq1  ACCTAGGGACATTTTCTGTAACTTATTTCAGAGGCCTGCTGCCATTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGACATTTTCTGTAACTTATTTCAGAGGCCTGCTGCCATTCATT  150

seq1  TATGAGTCCTGTTCCAGTTGGTTCTGGCGTCCTGTGTCTAAGGTCAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCCTGTTCCAGTTGGTTCTGGCGTCCTGTGTCTAAGGTCAAAGA  200

seq1  TGCTACTTTTTTGCCGTAAGTCATTATTGTGGAACACAGAATAGCGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTTTTGCCGTAAGTCATTATTGTGGAACACAGAATAGCGGAGA  250

seq1  TAATACATAGTAACCACAAGTATCGATTATGTTTCCTCTGCCAGGTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATAGTAACCACAAGTATCGATTATGTTTCCTCTGCCAGGTACAG  300

seq1  GGCAAGATATTTTATGTGGCGTTCCGGTTTCACATCTGCAGCCGGTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATATTTTATGTGGCGTTCCGGTTTCACATCTGCAGCCGGTTTGG  350

seq1  TCATATCCGCGTCACTAACTAAAGTCCCTTCTGCCCTGTCACTCAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCGCGTCACTAACTAAAGTCCCTTCTGCCCTGTCACTCAGCCAG  400

seq1  ACACATAAAGGTCACTCTCTTTCCGTCCGTGCATATACAAGAATACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAAGGTCACTCTCTTTCCGTCCGTGCATATACAAGAATACAAGA  450

seq1  CCTTTGATCCCACCGTCAAATATTTGTTGAATTTATCCATTTAACCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCCCACCGTCAAATATTTGTTGAATTTATCCATTTAACCTCCA  500

seq1  GCTCCTCTGTCCCAACCCTAATCAAAGACTTCGCCCTCTGTGAAGACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTGTCCCAACCCTAATCAAAGACTTCGCCCTCTGTGAAGACACC  550

seq1  ATTACAGTAAATAATCTCAGCAGACGCACCAGTCCCACTCTTGCCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTAAATAATCTCAGCAGACGCACCAGTCCCACTCTTGCCCTGGC  600

seq1  CTCCTCTCCTTGGGAGTGGAGACCACCATCTCCTGCGATCCAGCCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCTTGGGAGTGGAGACCACCATCTCCTGCGATCCAGCCCCAGT  650

seq1  TCTCGGCTCCATCCCTCCATAGGCCTCTGTACATTGTTTCTTTCCCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGCTCCATCCCTCCATAGGCCTCTGTACATTGTTTCTTTCCCTAGG  700

seq1  ATGTCTTCCCCTCTGCTCCTGACCTGGTAGCTGCCTCTCTGTCCTGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCCCTCTGCTCCTGACCTGGTAGCTGCCTCTCTGTCCTGAGGT  750

seq1  CTCTGCAAGTCCAGTGTCCTCTGGAAGATTCTCCTAGCTCTTCTTCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAGTCCAGTGTCCTCTGGAAGATTCTCCTAGCTCTTCTTCTAAA  800

seq1  ACCAGACACCTGTGCTAGTTTCCTTTGCATTGCTGTGACCAAGATAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACCTGTGCTAGTTTCCTTTGCATTGCTGTGACCAAGATAGTTG  850

seq1  AGAGAAACAACTTCATAGGAAGAAAAGCTGCTTGTGGCTTACAGTCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAACTTCATAGGAAGAAAAGCTGCTTGTGGCTTACAGTCCATC  900

seq1  ACGGAGGGAAGGCGAGGGAAAGTGGCTGTCGCGTCTGGTTGCCCAGGAAG  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGGAA-GCGAGGGAAAGTGGCTGTCGCGTCTGGTTGCCCAGGAAG  949

seq1  CAGAGTGGTCATGGTTTGACAGGGAAATGTTAGTGATCCCCCAAAACACA  1000
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGAGT-GTCATGGTTTGACA-GGAAATGTTAGTGATCCCCCAAAACACA  997

seq1  CCCAGGAGTCGATCTGATGCAACTCACAGCAGGGTCTTTATTCTAGTCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTCGATCTGATGCAACTCACAGCAGGGTCTTTATTCTAGTCAA  1047

seq1  GCTCCCACAACGTACCACCGTCACACAGGACAGTTTTGGTGTGTGTGGGA  1100
      |||||||||||||| || ||||||| ||||||| ||||||||||| | | 
seq2  GCTCCCACAACGTA-CAACGTCACA-AGGACAG-TTTGGTGTGTG-GTGG  1093

seq1  GCCCTGAATGTCTATCGGGGCAAGGCTTTATTGTAAGCAG  1140
      | |||||||||| |||  |||||||| |||||||||||||
seq2  GGCCTGAATGTC-ATC--GGCAAGGC-TTATTGTAAGCAG  1129

seq1: chr5_130797144_130798134
seq2: B6Ng01-001J01.g_69_1062 (reverse)

seq1  AGCCACCCAGATAAGTCC-GTGGTCTTAATTTCTTTGTGTATTTTATCTC  49
      ||||||| |   |||||| |||||||||||| || || ||| ||||||||
seq2  AGCCACCAAATAAAGTCCAGTGGTCTTAATTCCTATGGGTA-TTTATCTC  49

seq1  AGTTTTAC-AAAGTGTAACTAATAGAGACTGACAGACACACAGAGAGAAA  98
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACAAAAGTGTAACTAATAGAGACTGACAGACACACAGAGAGAAA  99

seq1  GACAGACACACAGAGACAGACTGACAGACACAGAGAAGCAGAGCGAGTAT  148
        |||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AGCAGACACACAGAGACAGACTGACAGACACA-AGAAGCAGAGCGAGAAT  148

seq1  ACACGCAAGCCCAGTTGCTAGGATTCCTGTTGCTGGCGATCACGTCCCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCAAGCCCAGTTGCTAGGATTCCTGTTGCTGGCGATCACGTCCCAG  198

seq1  ATCACCTGCTCTACTACTGTGTGGCTTTTGGCATTTTTACCCTCTCTGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGCTCTACTACTGTGTGGCTTTTGGCATTTTTACCCTCTCTGAG  248

seq1  CCTGGATCTCGTG-TTTGTCAAGTGAAAAT-AACAGTCACACATCTGCT-  295
      ||||||||||||| |||||||||||||||| |||||||||||||||||| 
seq2  CCTGGATCTCGTGTTTTGTCAAGTGAAAATAAACAGTCACACATCTGCTA  298

seq1  AAGATTCCTTCTGATGTACATATAGATTTTATAGCCTTGGAAAGACACAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCCTTCTGATGTACATATAGATTTTATAGCCTTGGAAAGACACAA  348

seq1  ATACTCGTAACAGCATCTGGCACACAGCAAGTGCTGAGTAATGTCTCTAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCGTAACAGCATCTGGCACACAGCAAGTGCTGAGTAATGTCTCTAC  398

seq1  TGTTAGGGGCCTCATCAGGTTGTGTTCAAAGGACTTATAAATCCCTCTCG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGGCCTCATCAGGTTGTGTTCAAAGGACTTATAAATCCCTCTCG  448

seq1  GTTTATAAATCCTGCTTTCCATGGAGGTAGAGAGAGGCAGAGTTTGCTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAATCCTGCTTTCCATGGAGGTAGAGAGAGGCAGAGTTTGCTTT  498

seq1  AGGTCTCTCAGAAAAGTGTTTTGTTTAAGTTTCATCTCTTGCATGTAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTCAGAAAAGTGTTTTGTTTAAGTTTCATCTCTTGCATGTAATT  548

seq1  TCCTAAGTGAATGGTTAGGTTTTTATAGAGATGTTTAAGTGGAATATTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTGAATGGTTAGGTTTTTATAGAGATGTTTAAGTGGAATATTGC  598

seq1  CTTCCTTCTATTCTGTAAGTGGTCTTTGCTGGCATGGAGCCTTTCCTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTATTCTGTAAGTGGTCTTTGCTGGCATGGAGCCTTTCCTGTT  648

seq1  GGGGCTGACTTAGTTTAGTTTTGGTGTGTAAGCGTGTGATGTACATTTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGACTTAGTTTAGTTTTGGTGTGTAAGCGTGTGATGTACATTTGA  698

seq1  GTGGTGTATCTTTGTGAGTGTGTGGGAGGGGGGCAAGTGTCCTGCTGTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTATCTTTGTGAGTGTGTGGGAGGGGGGCAAGTGTCCTGCTGTCT  748

seq1  GTGGAGGCCAGGGGAGGACATCAGGTGTCGTGCTGTGTCACTCTCTACCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCCAGGGGAGGACATCAGGTGTCGTGCTGTGTCACTCTCTACCT  798

seq1  TATTGCCTTGTGACAAGTACTTACAATGAAGCTGGAGTGAGGCTGGCAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCTTGTGACAAGTACTTACAATGAAGCTGGAGTGAGGCTGGCAGT  848

seq1  CAGTGACACAGCAGCGATCCTATCTCTGCCCATCCTCCAACCCCTACTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACACAGCAGCGATCCTATCTCTGCCCATCCTCCAACCCCTACTCC  898

seq1  ACTCCTGGGGTCACAGATGTGTGTGGCCATGCCTGGCTTTTTATTTGAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGGGTCACAGATGTGTGTGGCCATGCCTGGCTTTTTATTTGAGT  948

seq1  TCTGGGGATCCAAACTTACATTCTCATGCTTGCATCCCTTGAATTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGATCCAAACTTACATTCTCATGCTTGCATCCCTTGAATTC  994