BAC Information

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BAC

Clone NameB6Ng01-002E18
Chromosome5 (Build37)
Map Location 91,512,647 - 91,644,828
singlet/doubletdoublet
Overlap geneEreg, Areg
Upstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn
Downstream geneBtc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002E18.bB6Ng01-002E18.g
ACCDH840364DH840365
length957897
definitionDH840364|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E18, 5' end.DH840365|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,512,647 - 91,513,599)(91,643,932 - 91,644,828)
sequence
gaattcattataaggaacaaaaaccttaaataaaatatttacaattgaac
cacagattgttatacacaaacccactaaaatcatgaaaaacttaagactt
aaaacttaaggaactatatggacatgacactggggtatattccctccctg
tacaacttaaaacaatgatactgggctgtgattgtagctagtgacagaat
gcttaccaagcatgggcagtgctttcagtctaatcctcaacactttgcaa
aagtgacaggcattgatatcacagttttcggtgggtgggcttctcagtct
cctcatcaccacattcattccttcattcaacgttccgaagtcctgtgtca
ggcacaactgtgtatggagatagatgatttagactcatttttgtcaatca
ctggcatgatctcacactttaacataattatttacgatttcatctgtaaa
ctgtttggctggtggattaccacagcaagtcacacagaaactgcccaacc
aatgaaccgtctccacacaagcatcccaggtcagggaaggctagtgttcc
aggaggtgcacaccctacgctaaacgctctacaatgtacaaagacaaata
tttcacccgcggcctaagcaattcaaagcttataatagaagacgaactaa
taacttatcaaagctgtaataaacaatggaacagtacagaacaccgcttg
ggatcagctgcagcttacagcagggagaggtagcagttgacagcagtctt
aaagcagggcaaactcatcttgacatcagcaccttttcttgtctgtgtga
cttctaaataaaggatggtgcgcttggatagagaaactcgtgtcccagcc
cccacccccagcccccacccccaggtactttcctgggattgagaattgaa
atgtctcctccaggagttgcagggaagagctgattgtgtgtggggggtgg
gggtggg
gaattcaagttttttgaatttcatttcagccaaaatgtgtatagccagaa
gaatatttatttcttccaattagatagatctattggcctaataattttga
tgcactcatgtttgtatatgggtgcatgcatgtaaatgaatgtatcttta
attatttccattcaactacaagatttaagtttaaatacaagtccactaaa
tacaagttaccaccagacattccaattttcagtaatgacaaacttctaag
aaatccaggtatgaaatatcattttttctattctttctccatatatgtga
gttttatgttaccacactgagatccttcttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttcttccttcctctctctctctctctctctctctctctctctctctctct
ctctctgcccccccctctctatttttggtgtgttttctagacagggttac
tctctctagccctggctgtacaggaactcactctgtaaatcaggctggcc
ttgaactcagaaactcacctgcctctgccccccaagtgctgggattaaag
gtgtgtaccccatgcctggccactgatatctttgaaataaaaaatatatt
taaagaagttatatttaacctaaaatgtgggaaagtttagagttctagag
tgagtagccctgttggtttaattcgaaagggggaaatgaacatggtacca
aatactgaaatgctaagagaagaattattcacattttaagctaaaccaaa
agacagcgtaatttttgcattcctttgggagagctcagccacaaaactta
aaatccctgcaaggccctgtataaagctctcaataacccctcccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91512647_91513599
seq2: B6Ng01-002E18.b_46_1002

seq1  GAATTCATTATAAGGAACAAAAACCTTAAATAAAATATTTACAATTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATAAGGAACAAAAACCTTAAATAAAATATTTACAATTGAAC  50

seq1  CACAGATTGTTATACACAAACCCACTAAAATCATGAAAAACTTAAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTGTTATACACAAACCCACTAAAATCATGAAAAACTTAAGACTT  100

seq1  AAAACTTAAGGAACTATATGGACATGACACTGGGGTATATTCCCTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAGGAACTATATGGACATGACACTGGGGTATATTCCCTCCCTG  150

seq1  TACAACTTAAAACAATGATACTGGGCTGTGATTGTAGCTAGTGACAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTAAAACAATGATACTGGGCTGTGATTGTAGCTAGTGACAGAAT  200

seq1  GCTTACCAAGCATGGGCAGTGCTTTCAGTCTAATCCTCAACACTTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCAAGCATGGGCAGTGCTTTCAGTCTAATCCTCAACACTTTGCAA  250

seq1  AAGTGACAGGCATTGATATCACAGTTTTCGGTGGGTGGGCTTCTCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAGGCATTGATATCACAGTTTTCGGTGGGTGGGCTTCTCAGTCT  300

seq1  CCTCATCACCACATTCATTCCTTCATTCAACGTTCCGAAGTCCTGTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCACCACATTCATTCCTTCATTCAACGTTCCGAAGTCCTGTGTCA  350

seq1  GGCACAACTGTGTATGGAGATAGATGATTTAGACTCATTTTTGTCAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAACTGTGTATGGAGATAGATGATTTAGACTCATTTTTGTCAATCA  400

seq1  CTGGCATGATCTCACACTTTAACATAATTATTTACGATTTCATCTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGATCTCACACTTTAACATAATTATTTACGATTTCATCTGTAAA  450

seq1  CTGTTTGGCTGGTGGATTACCACAGCAAGTCACACAGAAACTGCCCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCTGGTGGATTACCACAGCAAGTCACACAGAAACTGCCCAACC  500

seq1  AATGAACCGTCTCCACACAAGCATCCCAGGTCAGGGAAGGCTAGTGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCGTCTCCACACAAGCATCCCAGGTCAGGGAAGGCTAGTGTTCC  550

seq1  AGGAGGTGCACACCCTACGCTAAACGCTCTACAATGTACAAAGACAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGCACACCCTACGCTAAACGCTCTACAATGTACAAAGACAAATA  600

seq1  TTTCACCCGCGGCCTAAGCAATTCAAAGCTTATAATAGAAGACGAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCGCGGCCTAAGCAATTCAAAGCTTATAATAGAAGACGAACTAA  650

seq1  TAACTTATCAAAGCTGTAATAAACAATGGAACAGTACAGAACACCGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATCAAAGCTGTAATAAACAATGGAACAGTACAGAACACCGCTTG  700

seq1  GGATCAGCTGCAGCTTACAGCAGGGAGAGGTAGCAGTTGACAGCAGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCTGCAGCTTACAGCAGGGAGAGGTAGCAGTTGACAGCAGTCTT  750

seq1  -AAGCAGGGCAAACTCATCTTGACATCAGCACCTTTTCTTGTCTGTGTGA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGGCAAACTCATCTTGACATCAGCACCTTTTCTTGTCTGTGTGA  800

seq1  CTTCTAAATAAAGGATGGTGCGCTTGGATAGAGAAACTCGTGTCCCAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAATAAAGGATGGTGCGCTTGGATAGAGAAACTCGTGTCCCAGCC  850

seq1  CCCACCCCCAGCCCCCACCCCCAGGTACTTTCCT-GGATTGAGAATTGAA  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCACCCCCAGCCCCCACCCCCAGGTACTTTCCTGGGATTGAGAATTGAA  900

seq1  ATGTCTCCTCCAGGAGTAACAGGGAAGAGCTGATTGTGTGTGGGGG--TG  946
      |||||||||||||||||  |||||||||||||||||||||||||||   |
seq2  ATGTCTCCTCCAGGAGTTGCAGGGAAGAGCTGATTGTGTGTGGGGGGTGG  950

seq1  GGGTGGG  953
      |||||||
seq2  GGGTGGG  957

seq1: chr5_91643932_91644828
seq2: B6Ng01-002E18.g_70_966 (reverse)

seq1  AATGGGAGGGGTTGTTGAGAGC-CTATAATGCCAGGGCCTAGCAGGGAGT  49
      ||||||||||||| ||||||||  ||||    |||||||| ||||||| |
seq2  AATGGGAGGGGTTATTGAGAGCTTTATA----CAGGGCCTTGCAGGGA-T  45

seq1  TCTAAGTTATTGTGGCTGAGCTCT-CCAAAGGAACTGCAAAAA-TGCGCT  97
      | |||||| ||||||||||||||| ||||||||| |||||||| | ||||
seq2  TTTAAGTT-TTGTGGCTGAGCTCTCCCAAAGGAA-TGCAAAAATTACGCT  93

seq1  GTCATTTGGTTTGGCTTGAAATGTGAATATTTCTTCTCATATGCATTTCA  147
      ||| |||||||| |||| ||||||||||| |||||||| || ||||||||
seq2  GTCTTTTGGTTTAGCTTAAAATGTGAATAATTCTTCTCTTA-GCATTTCA  142

seq1  GTATTTGGTACCATTGTCCATTTTCCCCATTAGAAATTAAACCAACAGGG  197
      ||||||||||||| ||| ||||| |||| || | ||||||||||||||||
seq2  GTATTTGGTACCA-TGTTCATTTCCCCCTTTCG-AATTAAACCAACAGGG  190

seq1  CTACTCACTCTAGAACTACAAAC-TTCCCACATTTTGAGCTAAATAAAAC  246
      |||||||||||||||||  |||| ||||||||||||  | |||||| |||
seq2  CTACTCACTCTAGAACTCTAAACTTTCCCACATTTTAGGTTAAATATAAC  240

seq1  TTCTTTTAAATATATTAGTTAATTCAAAGATCTCAGTGGCCAGGCATGGT  296
      ||| ||||||||||||  ||| ||||||||| ||||||||||||||||| 
seq2  TTC-TTTAAATATATTTTTTATTTCAAAGATATCAGTGGCCAGGCATGG-  288

seq1  GGTACACACCTTTAATCCCAGCACTTGGGGGGCAGAGGCAGGTGAGTTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACACCTTTAATCCCAGCACTTGGGGGGCAGAGGCAGGTGAGTTTC  338

seq1  TGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGTACAGCCAGGG  396
      ||||||||||||||||||| | ||||||||||||||| ||||||||||||
seq2  TGAGTTCAAGGCCAGCCTGATTTACAGAGTGAGTTCCTGTACAGCCAGGG  388

seq1  CTATAGAGAGAAACCCTGTCTCGAAAACACACCAAAAATAGAGAGGGGGG  446
      ||| |||||| |||||||||| ||||||||||||||||||||||||||||
seq2  CTAGAGAGAGTAACCCTGTCTAGAAAACACACCAAAAATAGAGAGGGGGG  438

seq1  GGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  488

seq1  AAGG--------AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  538
      ||||        ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  538

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAAGGATCTCAGTGTGGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAAGGATCTCAGTGTGGTA  588

seq1  ACATAAAACTCACATATATGGAGAAAGAATAGAAAAAATGATATTTCATA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACTCACATATATGGAGAAAGAATAGAAAAAATGATATTTCATA  638

seq1  CCTGGATTTCTTAGAAGTTTGTCATTACTGAAAATTGGAATGTCTGGTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTTCTTAGAAGTTTGTCATTACTGAAAATTGGAATGTCTGGTGG  688

seq1  TAACTTGTATTTAGTGGACTTGTATTTAAACTTAAATCTTGTAGTTGAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTATTTAGTGGACTTGTATTTAAACTTAAATCTTGTAGTTGAAT  738

seq1  GGAAATAATTAAAGATACATTCATTTACATGCATGCACCCATATACAAAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATTAAAGATACATTCATTTACATGCATGCACCCATATACAAAC  788

seq1  ATGAGTGCATCAAAATTATTAGGCCAATAGATCTATCTAATTGGAAGAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGCATCAAAATTATTAGGCCAATAGATCTATCTAATTGGAAGAAA  838

seq1  TAAATATTCTTCTGGCTATACACATTTTGGCTGAAATGAAATTCAAAAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCTTCTGGCTATACACATTTTGGCTGAAATGAAATTCAAAAAA  888

seq1  CTTGAATTC  897
      |||||||||
seq2  CTTGAATTC  897