BAC Information

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BAC

Clone NameB6Ng01-003K22
Chromosome5 (Build37)
Map Location 40,027,873 - 40,028,527
singlet/doubletsinglet
Overlap geneHs3st1
Upstream gene6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K22.bB6Ng01-003K22.g
ACCDH841315DH841316
length1,156655
definitionDH841315|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K22, 5' end.DH841316|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttctacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcttgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccaaaacct
aggatacccaagatataagatacaacttcctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacactatgcccttctttagaagtgggaac
aaaacacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaac
acagaagtggatgctcatagtcagctaatggatggatcacaggctcccaa
tagaggagctagagaagtacccatgagctaaaggatctgcaccctatagt
gatcacatatgactagccagtacccgagctctgctctagctgcatatgta
tcaaagatgctagtccgcatcactgaaagaaagtcatgacacgcacttta
atgctcgaacatgggacgctcagacaaagggatgatccggtgatagggag
gaattg
gaattcctgcagattcagggcttgtaagccctgcagtaggttgttttatg
taaatgtcttcattctttcatttaggagagtcaatcaaagtcctatatca
gcacttagaatacagtgagagaaaggtgattgcagatgaagctggaatga
aaaggcatgcttgccttgctgtgctcagaaaaaataactgcaccagaaac
agggacccgagcaggctgaaagtctcctagggaaagctggtttgcccttg
actcccaccccttctccaaacagactctttccagcgtagggaggagagag
ggactccgtgtcagggacagatatctgagattctattttcgaattttttt
ttttgtttttgttttgctggtattacgcatttgtgttggctttcaataat
gggtgacttttctgggccttaatttttctcaacattattctgcagctata
aagacatacaggtgcctagtgccatgctcaggaagttgcctttggtaaag
ttgataggtttcacagatgcaaatataaggctgctaatgaaatttcagaa
aaacaataagcaacagtttaggtgtatcccagatacttaaaaattcattt
actgtggactgaggatataggtcagtgtgtgtgtgtgggcgggggcgggg
ggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40027873_40028527
seq2: B6Ng01-003K22.g_67_721 (reverse)

seq1  CCCCCCCCCGCCCCCGCCCACACACACACACTGACCTATATCCTCAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCGCCCCCGCCCACACACACACACTGACCTATATCCTCAGTCC  50

seq1  ACAGTAAATGAATTTTTAAGTATCTGGGATACACCTAAACTGTTGCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAATGAATTTTTAAGTATCTGGGATACACCTAAACTGTTGCTTAT  100

seq1  TGTTTTTCTGAAATTTCATTAGCAGCCTTATATTTGCATCTGTGAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTGAAATTTCATTAGCAGCCTTATATTTGCATCTGTGAAACCT  150

seq1  ATCAACTTTACCAAAGGCAACTTCCTGAGCATGGCACTAGGCACCTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTTACCAAAGGCAACTTCCTGAGCATGGCACTAGGCACCTGTAT  200

seq1  GTCTTTATAGCTGCAGAATAATGTTGAGAAAAATTAAGGCCCAGAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATAGCTGCAGAATAATGTTGAGAAAAATTAAGGCCCAGAAAAGT  250

seq1  CACCCATTATTGAAAGCCAACACAAATGCGTAATACCAGCAAAACAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTATTGAAAGCCAACACAAATGCGTAATACCAGCAAAACAAAAA  300

seq1  CAAAAAAAAAAATTCGAAAATAGAATCTCAGATATCTGTCCCTGACACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAATTCGAAAATAGAATCTCAGATATCTGTCCCTGACACGG  350

seq1  AGTCCCTCTCTCCTCCCTACGCTGGAAAGAGTCTGTTTGGAGAAGGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCTCTCCTCCCTACGCTGGAAAGAGTCTGTTTGGAGAAGGGGTG  400

seq1  GGAGTCAAGGGCAAACCAGCTTTCCCTAGGAGACTTTCAGCCTGCTCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAGGGCAAACCAGCTTTCCCTAGGAGACTTTCAGCCTGCTCGGG  450

seq1  TCCCTGTTTCTGGTGCAGTTATTTTTTCTGAGCACAGCAAGGCAAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTCTGGTGCAGTTATTTTTTCTGAGCACAGCAAGGCAAGCATG  500

seq1  CCTTTTCATTCCAGCTTCATCTGCAATCACCTTTCTCTCACTGTATTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATTCCAGCTTCATCTGCAATCACCTTTCTCTCACTGTATTCTA  550

seq1  AGTGCTGATATAGGACTTTGATTGACTCTCCTAAATGAAAGAATGAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGATATAGGACTTTGATTGACTCTCCTAAATGAAAGAATGAAGAC  600

seq1  ATTTACATAAAACAACCTACTGCAGGGCTTACAAGCCCTGAATCTGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATAAAACAACCTACTGCAGGGCTTACAAGCCCTGAATCTGCAGG  650

seq1  AATTC  655
      |||||
seq2  AATTC  655