BAC Information

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BAC

Clone NameB6Ng01-004O13
Chromosome9 (Build37)5 (Build37)
Map Location 109,673,068 - 109,674,01324,305,126 - 24,305,557
singlet/doubletsingletsinglet
Overlap gene1700124P09Rik
Upstream geneIhpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109
Downstream geneSpink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O13.bB6Ng01-004O13.g
ACCDH842193DH842194
length946261
definitionDH842193|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O13, 5' end.DH842194|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,673,068 - 109,674,013)(24,305,126 - 24,305,557)
sequence
gaattcagttgaacaaacaatcgtgtccttatcactgactccaaaccagt
tcaggctttccgtgtaatatggcaacaaaaagcctgctatcgaatttcct
gctccaaacaagcacaaaatacaaaagcaatttttacactcatttaagta
ggagaaaaatcattaatgcttgctgaaaagcatatccctcattccttggc
atgctagtctaaaagagacaatgaaaacagtccactggcctgacaattcc
atgtcctgacaagtccatgaccatggccacagaaaggcaggctatgacac
agagataatgtggacagtcagtagctcaaacattggaaagacaactgtac
tgggaaaggagagtagaacccaggcactagcccatgacagaaatggaaac
atgtctgcctgagaaatctgtagtttgctagaatggtgaccatcaaacag
acacaagttcacatctgggcaagcttcctgctccctttacaaaaacatca
tgtggagcatcatcatacggtgatccacaatccagcacagtcccgtgcat
ctccaagttcaactcaagtccggcctggtctacagaacaagttccaggtt
agccatggctacatagagagaccctgtcttcaaatactgaaaatacaaaa
caacaagcatttatagcttacacttaggggagacagagaaattgtaattt
cttttaaaaattgttttacattattatatttgtgtaggtattcatgccag
aggcacacatgtagggatcagggaacaacttgagggattttgatctgttc
tccatcatgtggtaccccaggaattgaactaggttgtctggcttggtagg
taagtgtttctatcttctaagccagtccttctcaacatttctaaagcttt
ttattgaactgtaatacagatctcatgtggcattgggggggggggg
acggcattcgtcaccatgctctgctactttttttttttttaagatttgtt
tatttatttcatgtatgtgagtacactgtacactgttgctagctttggac
acaccagaagaagtaagtcattgtatcccattacagatggttgtgagcca
ccatgcaccatgtgggtgctgggaattgaactcaggacctctggaagagc
agtcagtgctctgaaccactgagccttctctccagcctgtgctacttttt
ttttttttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109673068_109674013
seq2: B6Ng01-004O13.b_47_992

seq1  GAATTCAGTTGAACAAACAATCGTGTCCTTATCACTGACTCCAAACCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGAACAAACAATCGTGTCCTTATCACTGACTCCAAACCAGT  50

seq1  TCAGGCTTTCCGTGTAATATGGCAACAAAAAGCCTGCTATCGAATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTTCCGTGTAATATGGCAACAAAAAGCCTGCTATCGAATTTCCT  100

seq1  GCTCCAAACAAGCACAAAATACAAAAGCAATTTTTACACTCATTTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAACAAGCACAAAATACAAAAGCAATTTTTACACTCATTTAAGTA  150

seq1  GGAGAAAAATCATTAATGCTTGCTGAAAAGCATATCCCTCATTCCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAATCATTAATGCTTGCTGAAAAGCATATCCCTCATTCCTTGGC  200

seq1  ATGCTAGTCTAAAAGAGACAATGAAAACAGTCCACTGGCCTGACAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTCTAAAAGAGACAATGAAAACAGTCCACTGGCCTGACAATTCC  250

seq1  ATGTCCTGACAAGTCCATGACCATGGCCACAGAAAGGCAGGCTATGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGACAAGTCCATGACCATGGCCACAGAAAGGCAGGCTATGACAC  300

seq1  AGAGATAATGTGGACAGTCAGTAGCTCAAACATTGGAAAGACAACTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAATGTGGACAGTCAGTAGCTCAAACATTGGAAAGACAACTGTAC  350

seq1  TGGGAAAGGAGAGTAGAACCCAGGCACTAGCCCATGACAGAAATGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGAGAGTAGAACCCAGGCACTAGCCCATGACAGAAATGGAAAC  400

seq1  ATGTCTGCCTGAGAAATCTGTAGTTTGCTAGAATGGTGACCATCAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCCTGAGAAATCTGTAGTTTGCTAGAATGGTGACCATCAAACAG  450

seq1  ACACAAGTTCACATCTGGGCAAGCTTCCTGCTCCCTTTACAAAAACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTCACATCTGGGCAAGCTTCCTGCTCCCTTTACAAAAACATCA  500

seq1  TGTGGAGCATCATCATACGGTGATCCACAATCCAGCACAGTCCCGTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCATCATCATACGGTGATCCACAATCCAGCACAGTCCCGTGCAT  550

seq1  CTCCAAGTTCAACTCAAGTCCGGCCTGGTCTACAGAACAAGTTCCAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTTCAACTCAAGTCCGGCCTGGTCTACAGAACAAGTTCCAGGTT  600

seq1  AGCCATGGCTACATAGAGAGACCCTGTCTTCAAATACTGAAAATACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGCTACATAGAGAGACCCTGTCTTCAAATACTGAAAATACAAAA  650

seq1  CAACAAGCATTTATAGCTTACACTTAGGGGAGACAGAGAAATTGTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGCATTTATAGCTTACACTTAGGGGAGACAGAGAAATTGTAATTT  700

seq1  CTTTTAAAAATTGTTTTACATTATTATATTTGTGTAGGTATTCATGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATTGTTTTACATTATTATATTTGTGTAGGTATTCATGCCAG  750

seq1  AGGCACACATGTAGGGATCAGGGAACAACTTGAGGGATTTTGATCTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACATGTAGGGATCAGGGAACAACTTGAGGGATTTTGATCTGTTC  800

seq1  TCCATCATGTGGTACCCCAGGAATTGAACTAGGTTGTCTGGCTTGGTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATGTGGTACCCCAGGAATTGAACTAGGTTGTCTGGCTTGGTAGG  850

seq1  TAAGTGTTTCTATCTTCTAAGCCAGTCCTTCTCAACATTTCTAAGGCTTT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAGTGTTTCTATCTTCTAAGCCAGTCCTTCTCAACATTTCTAAAGCTTT  900

seq1  TTATTGAACTGTAATACAGATCTCATGTGGCATTGGGGGGGGGGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAACTGTAATACAGATCTCATGTGGCATTGGGGGGGGGGGG  946

seq1: chr5_24305126_24305557
seq2: B6Ng01-004O13.g_104_337 (reverse)

seq1  ATTAAAAAAAAAAAGTTATTTAAGCCGGGCGTGGTGGCCCACGCCTTTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGACAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGGTCTACATGAGCGAGTTTCAGGAAAGCCAGGGCTACACAGAGAAGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGTCTCGAAACAAAACAAAACAAAACAAAAAACCCATAAAACCCCCCA  200
                                           || |||      |
seq2  -------------------------------------ATTAAA------A  7

seq1  AAACCAACCCCCCGCCCCCTCCCCCAAAAGATTAGAAGCAGTGGGCTGGG  250
      |||                      |||| | ||| | ||   |||||| 
seq2  AAA----------------------AAAAAAGTAGCA-CA---GGCTGGA  31

seq1  GAGATGGCTCAGCAGTTAAGAGCATTGACTGCTCTTTCAGAGGTCCTGAG  300
      |||| |||||||  ||| |||||| ||||||||||| |||||||||||||
seq2  GAGAAGGCTCAGTGGTTCAGAGCACTGACTGCTCTTCCAGAGGTCCTGAG  81

seq1  TTCAATTCCCAGCAACCA-------CATGGTGGCTCACAACCATCTGTAA  343
      |||||||||||||| |||       |||||||||||||||||||||||||
seq2  TTCAATTCCCAGCACCCACATGGTGCATGGTGGCTCACAACCATCTGTAA  131

seq1  TGGGAATCCGAT-AC---CCTCTTCTGATATGTCTGAAGACAGCA-----  384
      |||| || | || ||   | ||||||| | ||||  |||  ||||     
seq2  TGGG-ATACAATGACTTACTTCTTCTGGTGTGTCCAAAGCTAGCAACAGT  180

seq1  --ACAGTGTACTCACATACATGAAATAAAT----AAATCTTAAAAAAAAA  428
        ||||||||||||||||||||||||||||    ||||||||||||||||
seq2  GTACAGTGTACTCACATACATGAAATAAATAAACAAATCTTAAAAAAAAA  230

seq1  AAAA  432
      ||||
seq2  AAAA  234