BAC Information

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BAC

Clone NameB6Ng01-005H22
Chromosome5 (Build37)
Map Location 149,622,749 - 149,780,819
singlet/doubletdoublet
Overlap geneLOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386
Upstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik
Downstream geneLOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005H22.bB6Ng01-005H22.g
ACCDH842615DH842616
length4791,006
definitionDH842615|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H22, 5' end.DH842616|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,622,749 - 149,623,230)(149,779,811 - 149,780,819)
sequence
gaattcttttgcaatcagaggcttggggggggggggtaccctttgtatca
aactgatgtgccagccgttcattgcttggctgatattcttttctgcaaaa
ttgggaaatagagacggtttttgtgttcctactctctctaatttattatt
actgagtgaggggtcttgtttctcacactaaagatgctgaagcggggggt
cttgaaattgggaccagcctgggctaccacattagatgcccactccccca
gggatgataaagcacccagggtgggagtccgtaaaaaccccccacgggca
aaaaaaatgctaccctaggcctgctgactccaagattagattggctcagg
tggggcaggtcgggcagggcgaggccgggctgttgtggaaattggatgac
ccttccccttctcaattctgagctgctcctaagccatctcgataaccacc
ctaaaagcagaagtcttagagcatccaca
gaattctttttaaaaaaatctagggccttttccctcctggacaattagca
gttaaatatttaccagccgccactgtgtgtaaacaagatccaagaggaag
cagttttattttgcaagactcaatgtagagttcagataaagctgggcaga
tagaatcacagataagattgtgttgtggccacccttcaacccccaacggg
gtttctctgtatttccctggatgacctggaactcaatttgtagaccaggc
tggctttggactcaaagattcgcctgcctcagcctccagagtgctgggat
taaaggcatgcaccaccacaacccggcctttccctaatggaaggttctag
aaggcctgattatcatgacttcatgaggaatgacccacacaccccggaac
agcaacacgataggcttttcttcttcttctttttttttttttttttaatt
tttcatccctaaatggagatattggttacaaagcttctgggtattgaatc
taggtacctaatgggtatcaggagtctacaaaagtgaattttctgatatg
aaaattcagggatttatttatttatttatttatttacttacttacttact
tacttacttacttattaaccagtagcctttgatcctcgttgatagttgaa
ggtaagccagaagattctacaaagggtgaggccaaagcttggtgattgta
ttaattacttgtgaccggaattgctgatgaaaaaattgagggagtaaaac
ttgaggtttattgtaacgcggggtctaagagcgattttggtctgtggtgt
cggggaaggcagtagggaacactttctcttagtggtgctgggagcacatg
gtggctgtttgcccaccacactgatcagcatgaagccaagatgcatgggg
gagccaactgtaacgttgaatgtcatctctgactgctgtgtctggtgtgt
tctccagcacgtccacttatagaggccctaacataatttgaatcttaaca
atgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_149622749_149623230
seq2: B6Ng01-005H22.b_45_523

seq1  GAATTCTTTTGCAATCAGAGGCTTGGGGGGGGGGGGTACCCTTTGTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAATCAGAGGCTTGGGGGGGGGGGGTACCCTTTGTATCA  50

seq1  AACTGATGTGCCAGCCGTTCATTGCTTGGCTGATATTCATTTCTGCAGAA  100
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  AACTGATGTGCCAGCCGTTCATTGCTTGGCTGATATTCTTTTCTGCAAAA  100

seq1  TTGTAAAATAGAGACTGTTTTTGTGTTCCTACTCTCTCAAATTTATTATT  150
      |||  |||||||||| |||||||||||||||||||||| |||||||||||
seq2  TTGGGAAATAGAGACGGTTTTTGTGTTCCTACTCTCTCTAATTTATTATT  150

seq1  ACAGAGTGAGGGGTCTTGTTTCTCACACTAAAGATGCTGAAGCAAGAGGG  200
      || ||||||||||||||||||||||||||||||||||||||||  | |||
seq2  ACTGAGTGAGGGGTCTTGTTTCTCACACTAAAGATGCTGAAGC-GGGGGG  199

seq1  TCTTGAAATTGGGACCAGCCTGGGCTACAAAAAGAGATGCCCACGCCCCC  250
      |||||||||||||||||||||||||||| | |  |||||||||| |||||
seq2  TCTTGAAATTGGGACCAGCCTGGGCTACCACATTAGATGCCCACTCCCCC  249

seq1  AGGGATGAGAAAGCACAGAGGGTGGGAGTCAGTAAAAACAGCCCAGGGGC  300
      |||||||| |||||||  |||||||||||| ||||||||  |||| ||||
seq2  AGGGATGATAAAGCACCCAGGGTGGGAGTCCGTAAAAACCCCCCACGGGC  299

seq1  AAAAAGAATGCTACCCTAGGCCAGGCTGACTCCAAGATTAGATTGGCTCA  350
      ||||| ||||||||||||||||  ||||||||||||||||||||||||||
seq2  AAAAAAAATGCTACCCTAGGCC-TGCTGACTCCAAGATTAGATTGGCTCA  348

seq1  GGTGGGGCAGGTCGGGCAGGGCGAGGCCGGGCAGTTGTGGAAGCTGGATG  400
      |||||||||||||||||||||||||||||||| |||||||||  ||||||
seq2  GGTGGGGCAGGTCGGGCAGGGCGAGGCCGGGCTGTTGTGGAAATTGGATG  398

seq1  ACCCTTCCAGGGAAGCAATTCTGAGCTGCTCCTAAGCCA-CTCGGATAAC  449
      ||||||||       |||||||||||||||||||||||| ||| ||||||
seq2  ACCCTTCC-CCTTCTCAATTCTGAGCTGCTCCTAAGCCATCTC-GATAAC  446

seq1  CACCCAGAAAGCACGAGTCTTAGAGCATCCACA  482
      |||||  ||||||  ||||||||||||||||||
seq2  CACCCTAAAAGCAGAAGTCTTAGAGCATCCACA  479

seq1: chr5_149779811_149780819
seq2: B6Ng01-005H22.g_67_1072 (reverse)

seq1  AGTCATTGTTAAGATTTAAATCTATTTTAGGGCCTTTATAAAGTGGGACC  50
      |||||||||||||||| |||| ||| ||||||||| ||| |||| |||| 
seq2  AGTCATTGTTAAGATTCAAAT-TATGTTAGGGCCTCTAT-AAGT-GGACG  47

seq1  TGCTGGAGAACACACCAGACACAG-AGTCAGAGATGACATTCAACGTTAC  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTGGAGAACACACCAGACACAGCAGTCAGAGATGACATTCAACGTTAC  97

seq1  AGTTGGCTCCCCCCTGCATTCTTTGCTTCCTGCTGATCACTGTGGTGGGC  149
      ||||||||||||| |||| |||| ||||| ||||||||| ||||||||||
seq2  AGTTGGCTCCCCCATGCA-TCTTGGCTTCATGCTGATCAGTGTGGTGGGC  146

seq1  AAACAGCCACCATGTGCTCCCAGCACCACTAAGAG-AAGTGTTCCCTACT  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACAGCCACCATGTGCTCCCAGCACCACTAAGAGAAAGTGTTCCCTACT  196

seq1  GCCTTCCCTGACACCACAGACCAAAATCGCTCTTAGACCCCGCGTTACAC  248
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTTCCCCGACACCACAGACCAAAATCGCTCTTAGACCCCGCGTTACAA  246

seq1  TAAACCTCAAGTTTTACTCCCTCAAGTTTTTTCATCAGCAATTCTGGTCA  298
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TAAACCTCAAGTTTTACTCCCTCAA-TTTTTTCATCAGCAATTCCGGTCA  295

seq1  CAAGTAATTAATACAATCACCAAGCTTTGGCCTCACCCTTTCTAGAATCT  348
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAGTAATTAATACAATCACCAAGCTTTGGCCTCACCCTTTGTAGAATCT  345

seq1  TCTGGCTTACCTTCAACTATCAACGAGGATCAAAGGCTACTGGTTAATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTACCTTCAACTATCAACGAGGATCAAAGGCTACTGGTTAATAA  395

seq1  GTAAGTAAGTAAGTAAGTAAGTAAGTAAATAAATAAATAAATAAATAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAGTAAGTAAGTAAGTAAGTAAATAAATAAATAAATAAATAAAT  445

seq1  CCCTGAATTTTCATATCAGAAAATTCACTTTTGTAGACTCCTGATACCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATTTTCATATCAGAAAATTCACTTTTGTAGACTCCTGATACCCA  495

seq1  TTAGGTACCTAGATTCAATACCCAGAAGCTTTGTAACCAATATCTCCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTACCTAGATTCAATACCCAGAAGCTTTGTAACCAATATCTCCATT  545

seq1  TAGGGATGAAAAATTAAAAAAAAAAAAAAAAAGAAGAAGAAGAAAAGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGAAAAATTAAAAAAAAAAAAAAAAAGAAGAAGAAGAAAAGCCT  595

seq1  ATCGTGTTGCTGTTCCGGGGTGTGTGGGTCATTCCTCATGAAGTCATGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTTGCTGTTCCGGGGTGTGTGGGTCATTCCTCATGAAGTCATGAT  645

seq1  AATCAGGCCTTCTAGAACCTTCCATTAGGGAAAGGCCGGGTTGTGGTGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCCTTCTAGAACCTTCCATTAGGGAAAGGCCGGGTTGTGGTGGT  695

seq1  GCATGCCTTTAATCCCAGCACTCTGGAGGCTGAGGCAGGCGAATCTTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTTAATCCCAGCACTCTGGAGGCTGAGGCAGGCGAATCTTTGA  745

seq1  GTCCAAAGCCAGCCTGGTCTACAAATTGAGTTCCAGGTCATCCAGGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGCCAGCCTGGTCTACAAATTGAGTTCCAGGTCATCCAGGGAAA  795

seq1  TACAGAGAAACCCCGTTGGGGGTTGAAGGGTGGCCACAACACAATCTTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACCCCGTTGGGGGTTGAAGGGTGGCCACAACACAATCTTAT  845

seq1  CTGTGATTCTATCTGCCCAGCTTTATCTGAACTCTACATTGAGTCTTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTCTATCTGCCCAGCTTTATCTGAACTCTACATTGAGTCTTGCA  895

seq1  AAATAAAACTGCTTCCTCTTGGATCTTGTTTACACACAGTGGCGGCTGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACTGCTTCCTCTTGGATCTTGTTTACACACAGTGGCGGCTGGT  945

seq1  AAATATTTAACTGCTAATTGTCCAGGAGGGAAAAGGCCCTAGATTTTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAACTGCTAATTGTCCAGGAGGGAAAAGGCCCTAGATTTTTTT  995

seq1  AAAAAGAATTC  1009
      |||||||||||
seq2  AAAAAGAATTC  1006