BAC Information

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BAC

Clone NameB6Ng01-005M19
Chromosome5 (Build37)
Map Location 5,240,400 - 5,399,751
singlet/doubletdoublet
Overlap genePftk1
Upstream geneFzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M19.bB6Ng01-005M19.g
ACCDH842838DH842839
length1,0531,149
definitionDH842838|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M19, 5' end.DH842839|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,398,701 - 5,399,751)(5,240,400 - 5,241,577)
sequence
gaattcaatggaagctttgtctactgtgagttcaaggtcagcttgctcta
caatttgagttcaagggcagctggggtgagactcccttactactgcttta
tctgaagggatcgtgtgttcccttcccccttgatatcccattcccatcct
atgtccttctggactcttatacttcacagtgttccatgcctctctgcaac
aatatcattttaaacttcctatgacaaatttaaaaataaaacttagaaca
tatattcaatgatgataaattactaaacataaagtgtaaaattatattgg
aattaatttcttatggagatgtgtatagtgttgcctgcccctgtattcta
ggcaagtataccaggagcattcattctatcgtttggtggatatgggggct
ttgaaactcttcaattaagtcagttggaatcatggagatttttgttttgg
gttttagttttggtttcttgagacaggctctgtctgtgtagtcctggcca
gttggaactggcttatggagaccaggctggcctcaaactcagtgattctt
ctgcctctgcctcccaaatgctgggattaaagggtgtgccaccatgcaat
gcctcttcgtttgttttaatgtggaataaacagaactcagttctttgaat
ttcttcggtatattaccccaatgggaaatgttttttcacatataagataa
gcctgaaatcccgttataagtgcctggacaccagcataaaaatgcagtca
ataaccactagaacaatactagagcccagaaaccctaccacaggaggccc
tgagtatgcaaaatagcttgaagcacaagacaaagacctttaaaatagcc
tttatgaatatgatggaaattcttaaagaggaaagaataattccctttta
aaatctatgaaaacacaacagtaaaaggaaatgaataagacagttcagga
cttgagagtagaaatagtattcataagaaaaccaatctcgaagggaaaat
tagaaacaaatcaaggattagggtacttttactaaggtcctctgaaggca
aga

gaattcttgtcttcggagaaatcagaaataactggggctgtacaacactt
tcagcatcatttactctagtctgagtgtataaatgggagaatctcccaga
aagatgactttcccaaaactatctgctcagttttaattaaacacattttt
cctcaaagcaaaacttgtctctttaatctgttcccattcaacatgcagcg
caaggaaaagaaatagcaaaatctggtaattaacaatattttaagaaaac
agcctaactagtaacaaagcattgtttcttagacatggattaatttttta
gaggtgtccagatgttgcagcctgggtaacatcaacaacagaaagggtat
ctcccaattacgcaatacctcagatcaagacagtggaggcaaggtcagtc
tctgtgaaggtcgctcagggtcagccacctccatcctactgcttctcagc
ctgtgttccctctgtagtgtccctccctgggtcataagaccatcccttac
attggattaggaagaagcccaacgactgtattttcacccaatcacctctt
ccaatggggtctgcggtactgtggtttagaaattgaacatagaggttttg
gggggaacacaatacaggccacaggaaaatacacagattggtgacagatg
aatatactttgaattttaatatagacaggatgggagttgcagaggagatc
caagtcctttttttttatttttaatgagattttatttccatatatgttca
attatacactacactgaagagctttttactttttttctcttcaaaaaata
tacataaaatcctgtaagatgtaatggacatttggcgtgcagagctgcct
gactggtcccgtgtgggttatgttctcccgcattctcagcgccaggaaac
agcttgagcagtcgcacttcagcatcaccctcctgagcccaagttcgaaa
tagaaattgtcaacctatattaaacttcagaataaatgatcttcatggag
aaatatggtgtcaagttcctctctaattcacttttaatcagagtgaaagc
ttctatttgcttttggctcttcaccaatgtatcttaatgtagaaaaggta
ctgcagaaacccctggctctccactatctgctaccaatgctagaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5398701_5399751
seq2: B6Ng01-005M19.b_45_1097 (reverse)

seq1  TCTTGCC-TCTGAGGACCTT-GTTAAAGTTCCTAATTCCTTGATTTTGTT  48
      ||||||| || ||||||||| || ||||| ||  | ||||||| ||||||
seq2  TCTTGCCTTCAGAGGACCTTAGTAAAAGTACCCTAATCCTTGA-TTTGTT  49

seq1  TCTAATTTTCCC-TCGGGTTTGGTTTTCTTTATTGATTCTATTTCTACTC  97
      |||||||||||| ||| | ||||||||| ||||  || ||||||||||||
seq2  TCTAATTTTCCCTTCGAGATTGGTTTTC-TTATGAATACTATTTCTACTC  98

seq1  TCAAGTCTTGAACTGTCTTATTCATTTCCTTTTACTGTTTGTGTTTTCAT  147
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAAGTCCTGAACTGTCTTATTCATTTCCTTTTACTG-TTGTGTTTTCAT  147

seq1  AGATTTTTAAAAGGGATTTATTCTTTCCTCTTTAAGAACTTCCATCATAT  197
      ||| |||||||||||| ||||||||||||||||||||| |||||||||||
seq2  AGA-TTTTAAAAGGGAATTATTCTTTCCTCTTTAAGAATTTCCATCATAT  196

seq1  TCATAAAGGCTATTTT-AAGGTCTTTGTCTTGTGCTTC-AGCTATTTTGC  245
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  TCATAAAGGCTATTTTAAAGGTCTTTGTCTTGTGCTTCAAGCTATTTTGC  246

seq1  AATACTCAGGGCCTCCTGTGGTAGGGTTTCTGGGCTCTAGTATTGTTCTA  295
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATACTCAGGGCCTCCTGTGGTAGGGTTTCTGGGCTCTAGTATTGTTCTA  295

seq1  GTGGTTATTGACTGCATTTTTATGCTGGTGTCCAGGCACTTATAACGGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATTGACTGCATTTTTATGCTGGTGTCCAGGCACTTATAACGGGA  345

seq1  TTTCAGGCTTATCTTATATGTG-AAAAACATTTCCCATTGGGGTAATATA  394
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTCAGGCTTATCTTATATGTGAAAAAACATTTCCCATTGGGGTAATATA  395

seq1  CCGAAG-AATTCAAAGAACTGAGTTCTGTTTATTCCACATTAAAACAAAC  443
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGAAATTCAAAGAACTGAGTTCTGTTTATTCCACATTAAAACAAAC  445

seq1  GAAGAGGCATTGCATGGTGGCACACCCTTTAATCCCAGCATTTGGGAGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCATTGCATGGTGGCACACCCTTTAATCCCAGCATTTGGGAGGC  495

seq1  AGAGGCAGAAGAATCACTGAGTTTGAGGCCAGCCTGGTCTCCATAAGCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAAGAATCACTGAGTTTGAGGCCAGCCTGGTCTCCATAAGCCA  545

seq1  GTTCCAACTGGCCAGGACTACACAGACAGAGCCTGTCTCAAGAAACCAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACTGGCCAGGACTACACAGACAGAGCCTGTCTCAAGAAACCAAA  595

seq1  ACTAAAACCCAAAACAAAAATCTCCATGATTCCAACTGACTTAATTGAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACCCAAAACAAAAATCTCCATGATTCCAACTGACTTAATTGAAG  645

seq1  AGTTTCAAAGCCCCCATATCCACCAAACGATAGAATGAATGCTCCTGGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAAGCCCCCATATCCACCAAACGATAGAATGAATGCTCCTGGTA  695

seq1  TACTTGCCTAGAATACAGGGGCAGGCAACACTATACACATCTCCATAAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTAGAATACAGGGGCAGGCAACACTATACACATCTCCATAAGA  745

seq1  AATTAATTCCAATATAATTTTACACTTTATGTTTAGTAATTTATCATCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTCCAATATAATTTTACACTTTATGTTTAGTAATTTATCATCAT  795

seq1  TGAATATATGTTCTAAGTTTTATTTTTAAATTTGTCATAGGAAGTTTAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATGTTCTAAGTTTTATTTTTAAATTTGTCATAGGAAGTTTAAA  845

seq1  ATGATATTGTTGCAGAGAGGCATGGAACACTGTGAAGTATAAGAGTCCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTGTTGCAGAGAGGCATGGAACACTGTGAAGTATAAGAGTCCAG  895

seq1  AAGGACATAGGATGGGAATGGGATATCAAGGGGGAAGGGAACACACGATC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATAGGATGGGAATGGGATATCAAGGGGGAAGGGAACACACGATC  945

seq1  CCTTCAGATAAAGCAGTAGTAAGGGAGTCTCACCCCAGCTGCCCTTGAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGATAAAGCAGTAGTAAGGGAGTCTCACCCCAGCTGCCCTTGAAC  995

seq1  TCAAATTGTAGAGCAAGCTGACCTTGAACTCACAGTAGACAAAGCTTCCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGTAGAGCAAGCTGACCTTGAACTCACAGTAGACAAAGCTTCCA  1045

seq1  TTGAATTC  1051
      ||||||||
seq2  TTGAATTC  1053


seq1: chr5_5240400_5241577
seq2: B6Ng01-005M19.g_69_1217

seq1  GAATTCTTGTCTTCGGAGAAATCAGAAATAACTGGGGCTGTACAACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTTCGGAGAAATCAGAAATAACTGGGGCTGTACAACACTT  50

seq1  TCAGCATCATTTACTCTAGTCTGAGTGTATAAATGGGAGAATCTCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCATTTACTCTAGTCTGAGTGTATAAATGGGAGAATCTCCCAGA  100

seq1  AAGATGACTTTCCCAAAACTATCTGCTCAGTTTTAATTAAACACATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACTTTCCCAAAACTATCTGCTCAGTTTTAATTAAACACATTTTT  150

seq1  CCTCAAAGCAAAACTTGTCTCTTTAATCTGTTCCCATTCAACATGCAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGCAAAACTTGTCTCTTTAATCTGTTCCCATTCAACATGCAGCG  200

seq1  CAAGGAAAAGAAATAGCAAAATCTGGTAATTAACAATATTTTAAGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAAGAAATAGCAAAATCTGGTAATTAACAATATTTTAAGAAAAC  250

seq1  AGCCTAACTAGTAACAAAGCATTGTTTCTTAGACATGGATTAATTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACTAGTAACAAAGCATTGTTTCTTAGACATGGATTAATTTTTTA  300

seq1  GAGGTGTCCAGATGTTGCAGCCTGGGTAACATCAACAACAGAAAGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCCAGATGTTGCAGCCTGGGTAACATCAACAACAGAAAGGGTAT  350

seq1  CTCCCAATTACGCAATACCTCAGATCAAGACAGTGGAGGCAAGGTCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATTACGCAATACCTCAGATCAAGACAGTGGAGGCAAGGTCAGTC  400

seq1  TCTGTGAAGGTCGCTCAGGGTCAGCCACCTCCATCCTACTGCTTCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGGTCGCTCAGGGTCAGCCACCTCCATCCTACTGCTTCTCAGC  450

seq1  CTGTGTTCCCTCTGTAGTGTCCCTCCCTGGGTCATAAGACCATCCCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCCTCTGTAGTGTCCCTCCCTGGGTCATAAGACCATCCCTTAC  500

seq1  ATTGGATTAGGAAGAAGCCCAACGACTGTATTTTCACCCAATCACCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTAGGAAGAAGCCCAACGACTGTATTTTCACCCAATCACCTCTT  550

seq1  CCAATGGGGTCTGCGGTACTGTGGTTTAGAAATTGAACATAGAGGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGGTCTGCGGTACTGTGGTTTAGAAATTGAACATAGAGGTTTTG  600

seq1  GGGGGAACACAATACAGGCCACAGGAAAATACACAGATTGGTGACAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAACACAATACAGGCCACAGGAAAATACACAGATTGGTGACAGATG  650

seq1  AATATACTTTGAATTTTAATATAGACAGGATGGGAGTTGCAGAGGAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTTTGAATTTTAATATAGACAGGATGGGAGTTGCAGAGGAGATC  700

seq1  CAAGTCCTTTTTTTTTATTTTTAATGAGATTTTATTTCCATATATGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTTTTTTTTTATTTTTAATGAGATTTTATTTCCATATATGTTCA  750

seq1  ATTATACACTACACTGAAGAGCTTTTTACTTTTTTTCTCTTCAAAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACACTACACTGAAGAGCTTTTTACTTTTTTTCTCTTCAAAAAATA  800

seq1  TACATAAAATCCTGTAAGATGTAATGGACA-TTGGCGTGCAGAGCTGCCT  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACATAAAATCCTGTAAGATGTAATGGACATTTGGCGTGCAGAGCTGCCT  850

seq1  GACTGGTCCCGTGTGGGTTATGTTCTCCCGCATTCTCAGCGCCAGGAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTCCCGTGTGGGTTATGTTCTCCCGCATTCTCAGCGCCAGGAAAC  900

seq1  AGCTTGAGCATGTCGCACTTCAGCATCACCCTCCTGAGCCCAAGTTCGAA  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGCA-GTCGCACTTCAGCATCACCCTCCTGAGCCCAAGTTCGAA  949

seq1  ATAGAAATTGTCAACCTATATTAAACTTCAGAATAAAATGATCTTCAATG  999
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  ATAGAAATTGTCAACCTATATTAAACTTCAGAAT-AAATGATCTTC-ATG  997

seq1  GAGAAAATATTGTGTTCACAGTTCCTCTCTAAATCACTTTAAATCAGAGT  1049
      ||| |||||| ||| ||| ||||||||||||| ||||||| |||||||||
seq2  GAG-AAATATGGTG-TCA-AGTTCCTCTCTAATTCACTTTTAATCAGAGT  1044

seq1  GGAAAAGTCTTCACATTTGCTTTTGGGCTCCTTTCA-CAATGAATCTTAG  1098
      |  |||| ||||  |||||||||| |||||  |||| ||||| |||||| 
seq2  G--AAAG-CTTC-TATTTGCTTTT-GGCTC--TTCACCAATGTATCTTA-  1086

seq1  ATGAAGAAAAAGGTAGCTGCAGGAAACACCCCTCTGCTTCTCTCGGGGCT  1148
      ||| || |||||||| |||||| ||     || |||  ||||        
seq2  ATGTAG-AAAAGGTA-CTGCAGAAA-----CCCCTGGCTCTC-----CAC  1124

seq1  TATCTGCTACCACATGCTAAGGAAAATACA  1178
      |||||||||||| |||||    | ||||||
seq2  TATCTGCTACCA-ATGCT----AGAATACA  1149


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