BAC Information

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BAC

Clone NameB6Ng01-005P09
Chromosome5 (Build37)
Map Location 139,287,208 - 139,428,207
singlet/doubletdoublet
Overlap geneEG384244
Upstream genePilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044
Downstream genePdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P09.bB6Ng01-005P09.g
ACCDH842951DH842952
length1,1271,134
definitionDH842951|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P09, 5' end.DH842952|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,287,208 - 139,288,329)(139,427,064 - 139,428,207)
sequence
gaattccagatgtgctcctgatgtgtcatctgaggatggacctcagaccc
acagggaagcacttcatgacctgagccatcttcccgttcctgttttcttc
ctttaatgggagaaagtgaggtgaaaaacaggaagccagcagattcctga
gttggcaaacgcagtgccaggtagacacttagggatgctgagacctgcta
gaccccaaatccctacctggtctcaggaatgttctgcacagcataccagc
agatggcctaagaccactgaaccaccaagggaatgaaacaataagtgaat
gcctgcccccacccccaaacttgcctcccatcttcctgtctcagcacaag
gcccaggaagcatagaaccaccatctagcagtctggccaagaacagaggc
cagcctcctttgtcaatcccaatgcaggcttccagtaggtgggacataag
tgttggcttatgcagatgtcctgtccatgaccacagaggtcacagggcat
ctcatcaccattacccccatccttccaagatcctccactattaaccggcc
cacggagccctgtggcaagccaggctgaaaagcatgtcttcatccctggc
ttgcagaagtgacagagatagagacatgctcaagtcactagaccagtgag
gaatgtagctggacagacgtcacccagggcaggtggtcataagggataaa
gggaggtacaaggcgcatcccttataaaatgaggtcaagccaggtgtggc
agctcatgctagtaatcctagcatttggagagccgaggcaggaagatgga
cagcctgggctagagcgggaccccatctcagaaaacaaaacaagtccagt
gagatggctaaaggtactttccaccgaggctgacaacctgagttcagtcc
ccaggacccacagagtgaaaagagagacagatggttgtgagcaaccaggc
acagatgttggagctaactgtcggagaagcatgcagaatgtttggtgctc
acagggaagggaaggccagaaggtcagtggagagggacgtggactcagtc
tttttgccttctagcattctactgtattccactggtgggaaacatagtac
tcagacttgccataaaactcaaggcgg
gaattccaactctgccctgcatctttcagcacttctgcttcactctctga
acaggacacagcgcttctttcttttcaaggagcggtggcagacccgagga
ctaagctctcagtggcgagccaggtgctccgttcctaagctcagaatcac
aagaactggcataaatcctcaccccctcaaagatgctcttggctcaaaga
ccaaagggagaggggccctgtgactatagatccctagggttgaggaccta
ctcgcattcttgtctcataggggaagcggttagcattccatccctggacc
acgagatccttagagtcactcagaaaggatgccaggactaacccaagctc
cgcctaactccacagctataccccatggccttgtcccatggtgctttgct
tcatcacagtcatcaatggaggaattgctatctctcttcagagccccatg
ggaaccagctggcccagaggagcagggttggggaatctagttttcaatga
ggtgggcatagccagcagttcctgttatctgcagtaagggtatagggtag
acccagtggggtcctgtggggttcacagtgcccagcagggctagatctct
gcactgggcagcagaagagatgagctggctcaggtaacattctggggtta
catttgacctttcgaagagtgtctggatgtaggtggaggggaactggccc
tgttctgctgtgggctctgacagacagacagacacactttccacctgttc
ttcccatggagggcggccagcagcagccctgttctgttgaggctggccaa
caggaggtgctggcccctactgaggctagcccatagcagttctatcagag
gagagagaggctggggcttctttgccctcacctgggctgtgtccccagaa
ttttaccttctgcctgggtgacctcatacttttctgctgtgctaggcaac
caacttcccttgatcttgctccaaagggatcagttcttctaatggggatc
gtggtcagtagccaggctttctttttgttgtttattttatttttcgagaa
tttactattatacatttctcttttcgtttcttctgccaaacttcacatac
cctcagactctcctctaattcaggcctctttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_139287208_139288329
seq2: B6Ng01-005P09.b_48_1174

seq1  GAATTCCAGATGTGCTCCTGATGTGTCATCTGAGGATGGACCTCAGACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGTGCTCCTGATGTGTCATCTGAGGATGGACCTCAGACCC  50

seq1  ACAGGGAAGCACTTCATGACCTGAGCCATCTTCCCGTTCCTGTTTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGCACTTCATGACCTGAGCCATCTTCCCGTTCCTGTTTTCTTC  100

seq1  CTTTAATGGGAGAAAGTGAGGTGAAAAACAGGAAGCCAGCAGATTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGGGAGAAAGTGAGGTGAAAAACAGGAAGCCAGCAGATTCCTGA  150

seq1  GTTGGCAAACGCAGTGCCAGGTAGACACTTAGGGATGCTGAGACCTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAAACGCAGTGCCAGGTAGACACTTAGGGATGCTGAGACCTGCTA  200

seq1  GACCCCAAATCCCTACCTGGTCTCAGGAATGTTCTGCACAGCATACCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAATCCCTACCTGGTCTCAGGAATGTTCTGCACAGCATACCAGC  250

seq1  AGATGGCCTAAGACCACTGAACCACCAAGGGAATGAAACAATAAGTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTAAGACCACTGAACCACCAAGGGAATGAAACAATAAGTGAAT  300

seq1  GCCTGCCCCCACCCCCAAACTTGCCTCCCATCTTCCTGTCTCAGCACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCCCACCCCCAAACTTGCCTCCCATCTTCCTGTCTCAGCACAAG  350

seq1  GCCCAGGAAGCATAGAACCACCATCTAGCAGTCTGGCCAAGAACAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAAGCATAGAACCACCATCTAGCAGTCTGGCCAAGAACAGAGGC  400

seq1  CAGCCTCCTTTGTCAATCCCAATGCAGGCTTCCAGTAGGTGGGACATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTTTGTCAATCCCAATGCAGGCTTCCAGTAGGTGGGACATAAG  450

seq1  TGTTGGCTTATGCAGATGTCCTGTCCATGACCACAGAGGTCACAGGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTTATGCAGATGTCCTGTCCATGACCACAGAGGTCACAGGGCAT  500

seq1  CTCATCACCATTACCCCCATCCTTCCAAGATCCTCCACTATTAACCGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACCATTACCCCCATCCTTCCAAGATCCTCCACTATTAACCGGCC  550

seq1  CACGGAGCCCTGTGGCAAGCCAGGCTGAAAAGCATGTCTTCATCCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGCCCTGTGGCAAGCCAGGCTGAAAAGCATGTCTTCATCCCTGGC  600

seq1  TTGCAGAAGTGACAGAGATAGAGACATGCTCAAGTCACTAGACCAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAGTGACAGAGATAGAGACATGCTCAAGTCACTAGACCAGTGAG  650

seq1  GAATGTAGCTGGACAGACGTCACCCAGGGCAGGTGGTCATAAGGGATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGCTGGACAGACGTCACCCAGGGCAGGTGGTCATAAGGGATAAA  700

seq1  GGGAGGTACAAGGCGCATCCCTTATAAAATGAGGTCAAGCCAGGTGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTACAAGGCGCATCCCTTATAAAATGAGGTCAAGCCAGGTGTGGC  750

seq1  AGCTCATGCTAGTAATCCTAGCATTTGGAGAGCCGAGGCAGGAAGATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGCTAGTAATCCTAGCATTTGGAGAGCCGAGGCAGGAAGATGGA  800

seq1  CAGCCTGGGCTAGAGCGGGACCCCATCTCAGAAAACAAAACAAGTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGCTAGAGCGGGACCCCATCTCAGAAAACAAAACAAGTCCAGT  850

seq1  GAGATGGCTAAAGGTACTTTCCACCGAGGCTGACAACCTGAGTTCAGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTAAAGGTACTTTCCACCGAGGCTGACAACCTGAGTTCAGTCC  900

seq1  CCAGGACCCACAGAGTGAAAGGAGAGAACAGATGGTTGTGAGCAACCAGG  950
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  CCAGGACCCACAGAGTGAAAAGAGAG-ACAGATGGTTGTGAGCAACCAGG  949

seq1  CACAGATGTT-GAGCTAACTGTCGGGAGAGCATGCAGAATG-TTGGTGCT  998
      |||||||||| ||||||||||||||   ||||||||||||| ||||||||
seq2  CACAGATGTTGGAGCTAACTGTCGGAGAAGCATGCAGAATGTTTGGTGCT  999

seq1  CACAGGG-AGGGAAGGCCAAGAGGTCAGTGAGAG-GGGACGTGGAACTCA  1046
      ||||||| |||||||||||  ||||||||| ||| ||||||||| |||||
seq2  CACAGGGAAGGGAAGGCCAGAAGGTCAGTG-GAGAGGGACGTGG-ACTCA  1047

seq1  GTC-TTTTGCCCTCTAGCA-TCTACTGTA-TCCACT-GTGGGACAACATA  1092
      ||| ||||||| ||||||| ||||||||| |||||| |||||| ||||||
seq2  GTCTTTTTGCCTTCTAGCATTCTACTGTATTCCACTGGTGGGA-AACATA  1096

seq1  GGTACTCAGAC-TGGCATAAAAC-CCAGGCGG  1122
       |||||||||| || |||||||| | ||||||
seq2  -GTACTCAGACTTGCCATAAAACTCAAGGCGG  1127

seq1: chr5_139427064_139428207
seq2: B6Ng01-005P09.g_69_1202 (reverse)

seq1  GAAAAAGGAGCCCATGAATTTGAGGGAGAGTACTGAGGGGTATGTAGGAG  50
      |||||||  |||  |||||| || ||||||| |||| ||||||||  || 
seq2  GAAAAAGAGGCC--TGAATTAGA-GGAGAGT-CTGA-GGGTATGT--GA-  42

seq1  GGTTTGGCAGGAGGAAAGGAAAAGAGAAATGTTATAATTAAATTAAAATC  100
       |||||||| || |||| ||||||||||||| ||||||   | |||| ||
seq2  AGTTTGGCA-GAAGAAACGAAAAGAGAAATG-TATAAT---AGTAAATTC  87

seq1  TCGAAAA--TAAATAAACAAACAAAAAAGAAAGCCTGGCTACTGACCACG  148
      |||||||   ||||||||||   |||||||||||||||||||||||||||
seq2  TCGAAAAATAAAATAAACAA--CAAAAAGAAAGCCTGGCTACTGACCACG  135

seq1  ATCCC--ATAGAAGGACTGATCCCTTTGGGGC-AGGTCAAGGG-AGTTGG  194
      |||||   |||||| |||||||||||||| || || ||||||| ||||||
seq2  ATCCCCATTAGAAGAACTGATCCCTTTGGAGCAAGATCAAGGGAAGTTGG  185

seq1  TTGCCTAGCAACAGCAG-AAAGTATGAGGTCA-CCAGGCAGAAGGTAAAA  242
      ||||||||| ||||||| |||||||||||||| |||||||||||||||||
seq2  TTGCCTAGC-ACAGCAGAAAAGTATGAGGTCACCCAGGCAGAAGGTAAAA  234

seq1  TTCTGGGGACACAGCCCAGGTGAGGGCAAAGAAGCCCCAGCCTTCTCTCT  292
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCTGGGGACACAGCCCAGGTGAGGGCAAAGAAGCCCCAGCC-TCTCTCT  283

seq1  CCCTCTGATAGAACTGCTATGGGCTAGCCTCAGTAGGGGCCAGCACCTCC  342
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCTCTGATAGAACTGCTATGGGCTAGCCTCAGTAGGGGCCAGCACCTCC  332

seq1  TGTTGGCCAGCCTCAACAGAACAGGGCTGCTGCTGGCCGCCCTCCATGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCAGCCTCAACAGAACAGGGCTGCTGCTGGCCGCCCTCCATGGG  382

seq1  AAGAACAGGTGGAAAGTGTGTCTGTCTGTCTGTCAGAGCCCACAGCAGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGTGGAAAGTGTGTCTGTCTGTCTGTCAGAGCCCACAGCAGAA  432

seq1  CAGGGCCAGTTCCCCTCCACCTACATCCAGACACTCTTCGAAAGGTCAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGTTCCCCTCCACCTACATCCAGACACTCTTCGAAAGGTCAAA  482

seq1  TGTAACCCCAGAATGTTACCTGAGCCAGCTCATCTCTTCTGCTGCCCAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCCCAGAATGTTACCTGAGCCAGCTCATCTCTTCTGCTGCCCAGT  532

seq1  GCAGAGATCTAGCCCTGCTGGGCACTGTGAACCCCACAGGACCCCACTGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATCTAGCCCTGCTGGGCACTGTGAACCCCACAGGACCCCACTGG  582

seq1  GTCTACCCTATACCCTTACTGCAGATAACAGGAACTGCTGGCTATGCCCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCCTATACCCTTACTGCAGATAACAGGAACTGCTGGCTATGCCCA  632

seq1  CCTCATTGAAAACTAGATTCCCCAACCCTGCTCCTCTGGGCCAGCTGGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGAAAACTAGATTCCCCAACCCTGCTCCTCTGGGCCAGCTGGTT  682

seq1  CCCATGGGGCTCTGAAGAGAGATAGCAATTCCTCCATTGATGACTGTGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGGCTCTGAAGAGAGATAGCAATTCCTCCATTGATGACTGTGAT  732

seq1  GAAGCAAAGCACCATGGGACAAGGCCATGGGGTATAGCTGTGGAGTTAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGCACCATGGGACAAGGCCATGGGGTATAGCTGTGGAGTTAGG  782

seq1  CGGAGCTTGGGTTAGTCCTGGCATCCTTTCTGAGTGACTCTAAGGATCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTTGGGTTAGTCCTGGCATCCTTTCTGAGTGACTCTAAGGATCTC  832

seq1  GTGGTCCAGGGATGGAATGCTAACCGCTTCCCCTATGAGACAAGAATGCG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCAGGGATGGAATGCTAACCGCTTCCCCTATGAGACAAGAATGCG  882

seq1  AGTAGGTCCTCAACCCTAGGGATCTATAGTCACAGGGCCCCTCTCCCTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTCCTCAACCCTAGGGATCTATAGTCACAGGGCCCCTCTCCCTTT  932

seq1  GGTCTTTGAGCCAAGAGCATCTTTGAGGGGGTGAGGATTTATGCCAGTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGAGCCAAGAGCATCTTTGAGGGGGTGAGGATTTATGCCAGTTC  982

seq1  TTGTGATTCTGAGCTTAGGAACGGAGCACCTGGCTCGCCACTGAGAGCTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTCTGAGCTTAGGAACGGAGCACCTGGCTCGCCACTGAGAGCTT  1032

seq1  AGTCCTCGGGTCTGCCACCGCTCCTTGAAAAGAAAGAAGCGCTGTGTCCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCGGGTCTGCCACCGCTCCTTGAAAAGAAAGAAGCGCTGTGTCCT  1082

seq1  GTTCAGAGAGTGAAGCAGAAGTGCTGAAAGATGCAGGGCAGAGTTGGAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGAGTGAAGCAGAAGTGCTGAAAGATGCAGGGCAGAGTTGGAAT  1132

seq1  TC  1144
      ||
seq2  TC  1134