BAC Information

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BAC

Clone NameB6Ng01-005P20
Chromosome5 (Build37)
Map Location 92,068,797 - 92,195,044
singlet/doubletdoublet
Overlap geneEG665860, LOC665864, LOC100040506
Upstream geneRassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik
Downstream genePpia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P20.bB6Ng01-005P20.g
ACCDH842971DH842972
length1,015976
definitionDH842971|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P20, 5' end.DH842972|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,194,035 - 92,195,044)(92,068,797 - 92,069,776)
sequence
gaattctatttaggagcagttcatctgcccaaattgaatgtagtggtcca
cctctgattttctatattttctttgctcagatccttttgaaatttgtgat
ttatgtttgtcaatcagcttatagaaccctgctcctgaaaaaaaacatct
agccaggtccccactatggactgaagggcaccgttccctccaacttccaa
gctcctttcctcatagctcagaatatccctcttgcctggcagatatgtta
aaaggtcacatctgagggtcatttgtgtgattatgaggtgacaaagctgt
gatttataacaccttgaaggacaatgtgttggaagagggtctggctcttg
gtttaaagaggaaaggcagaaagggtggggattatgtcattagtgggagg
ccagattgctgggtaaaaaacttactgggcttggagctttaaaaaacact
ggtggagtttagaagccatggctaggatgagcctctgtaaaaacgtctaa
gatcagggtgaataagctatagcaaggagcctgatttcttggtagttttg
tttgtaagacgttttgccctggtgatttgggaaggctaagagaacactag
acacattcgtcaggtgtcatcttcactcactggacaatctggcttcttag
agtcttaaagatcatgtagggcacatgtgtgtatacgtgtgtgtatatgt
gtgtttatacacctgcatacatgtgcttacatgcaagtaggagtctggac
cccaggctcatgtgcacattccccgatggtaattgggaagggtgacagaa
gtctggtcaatgattaagttcaggaaaggaacactgaccccgaagtactt
tacttgctacagaggcaggacattttaaaatccatgtattaagacttatc
cacaaatttgatttgtatcatcctaggattttctgtccctcaggagtgtg
tgcctcatgtgtggaacatttgaagccatacacttatgtgctggtctttc
tttcatgttgccata
gaattcctcaggaagactaaaggtcccatgagaataaaaaaaaaaaaaaa
aaaaaaaaaagaaagaaagaaaaaaaaaaaaaaaagaaaggacagtgcct
tagtcagggtttgtgttcctgcacaaaccatcatgactaagaagcaagtt
ggggaggaaagggtttattcagcttatacttccacattgctgttcatcac
caaaggaagtcaggtcaggaacccacacagggcaagaacttggagacagg
agctgatgcagaggccatggaggatgctgcttactggcttgctcagccag
gactaccaacccagggatggcaccatccacaacaggctgggccctcccca
cctcctgatcactaactgagaaaatgtcttactgctgaatctcatggagg
cattttctcaaggaggctcctttctctgtgacaactcaagcttgtgtcaa
gttgacacacaaaaccagccagtacagacacacagagaagcatataaggc
catggctacctggcactactgttacaaaacatagataaagccagggacag
tggtacacacctgtcatctcagcagacactaggaaggttgaagtaggaga
agggtaagtgtgtgagttcagggttcatctgggcaatgtcacgaaattgt
ctcccaaagctcaaacaacataaagactcagatctttatacatgctcccc
ggcaaacatttgtctttgtctcttctttcttttatctgttgtaagaagag
atgaaaaaactgaacaaacataaaacactgataatgggctggtgacagct
gaaaaagaaaagggtaaaaacctgggtttgctcctgaaacccagctcaca
gaattaaaatgcaaatatgacgattatgaaacaccccccccattgctttt
ggcatgctttttcacagcaataagacttcacatgtaaaatcaacacatta
aatctaatcttagaaatattttgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92194035_92195044
seq2: B6Ng01-005P20.b_46_1060 (reverse)

seq1  TATGGCAACATG-AAGGAAGACCCGCACATTAGTGTCTGGTTTCACATTC  49
      |||||||||||| ||| |||||| |||||| ||||| ||| |||| ||  
seq2  TATGGCAACATGAAAGAAAGACCAGCACATAAGTGTATGGCTTCAAATGT  50

seq1  TCCACACATGA-GCACACACTCCTGA-GGACAG-AAATCCTA-GATGATA  95
      ||||||||||| |||||||||||||| |||||| |||||||| |||||||
seq2  TCCACACATGAGGCACACACTCCTGAGGGACAGAAAATCCTAGGATGATA  100

seq1  CTAAACAAACTTGTGGATAAGTCTTTATACATGGATTTTTAAATGTCCTG  145
      | || |||| ||||||||||||||| ||||||||||||| ||||||||||
seq2  CAAATCAAATTTGTGGATAAGTCTTAATACATGGATTTTAAAATGTCCTG  150

seq1  CCTCTGTAG-AAGCTAAGTACTTTGGGGTACGTGTTACCTTTCCTGAACT  194
      ||||||||| |||  |||||||| |||||  ||||| |||||||||||||
seq2  CCTCTGTAGCAAGTAAAGTACTTCGGGGTCAGTGTT-CCTTTCCTGAACT  199

seq1  TAATCCTTGACCAGACTTCTGTCACCCTTCCCAATTACCATAGGGGAATG  244
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAATCATTGACCAGACTTCTGTCACCCTTCCCAATTACCATCGGGGAATG  249

seq1  TGCACATGAGCCTGGGGTCCAGACTCCTACTTGCATGTAAGCACATGTAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGAGCCTGGGGTCCAGACTCCTACTTGCATGTAAGCACATGTAT  299

seq1  GCAGGTGTATAAACACACATATACACACACGTATACACACATGTGCCCTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTATAAACACACATATACACACACGTATACACACATGTGCCCTA  349

seq1  CATGATCTTTAAGACTCTAAGAAGCCAGATTGTCCAGTGAGTGAAGATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTTTAAGACTCTAAGAAGCCAGATTGTCCAGTGAGTGAAGATGA  399

seq1  CACCTGACGAATGTGTCTAGTGTTCTCTTAGCCTTCCCAAATCACCAGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACGAATGTGTCTAGTGTTCTCTTAGCCTTCCCAAATCACCAGGG  449

seq1  CAAAACGTCTTACAAACAAAACTACCAAGAAATCAGGCTCCTTGCTATAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGTCTTACAAACAAAACTACCAAGAAATCAGGCTCCTTGCTATAG  499

seq1  CTTATTCACCCTGATCTTAGACGTTTTTACAGAGGCTCATCCTAGCCATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCACCCTGATCTTAGACGTTTTTACAGAGGCTCATCCTAGCCATG  549

seq1  GCTTCTAAACTCCACCAGTGTTTTTTAAAGCTCCAAGCCCAGTAAGTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAACTCCACCAGTGTTTTTTAAAGCTCCAAGCCCAGTAAGTTTT  599

seq1  TTACCCAGCAATCTGGCCTCCCACTAATGACATAATCCCCACCCTTTCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGCAATCTGGCCTCCCACTAATGACATAATCCCCACCCTTTCTG  649

seq1  CCTTTCCTCTTTAAACCAAGAGCCAGACCCTCTTCCAACACATTGTCCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCTTTAAACCAAGAGCCAGACCCTCTTCCAACACATTGTCCTT  699

seq1  CAAGGTGTTATAAATCACAGCTTTGTCACCTCATAATCACACAAATGACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGTTATAAATCACAGCTTTGTCACCTCATAATCACACAAATGACC  749

seq1  CTCAGATGTGACCTTTTAACATATCTGCCAGGCAAGAGGGATATTCTGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGTGACCTTTTAACATATCTGCCAGGCAAGAGGGATATTCTGAG  799

seq1  CTATGAGGAAAGGAGCTTGGAAGTTGGAGGGAACGGTGCCCTTCAGTCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGAAAGGAGCTTGGAAGTTGGAGGGAACGGTGCCCTTCAGTCCA  849

seq1  TAGTGGGGACCTGGCTAGATGTTTTTTTTCAGGAGCAGGGTTCTATAAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGGACCTGGCTAGATGTTTTTTTTCAGGAGCAGGGTTCTATAAGC  899

seq1  TGATTGACAAACATAAATCACAAATTTCAAAAGGATCTGAGCAAAGAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACAAACATAAATCACAAATTTCAAAAGGATCTGAGCAAAGAAAA  949

seq1  TATAGAAAATCAGAGGTGGACCACTACATTCAATTTGGGCAGATGAACTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAATCAGAGGTGGACCACTACATTCAATTTGGGCAGATGAACTG  999

seq1  CTCCTAAATAGAATTC  1010
      ||||||||||||||||
seq2  CTCCTAAATAGAATTC  1015

seq1: chr5_92068797_92069776
seq2: B6Ng01-005P20.g_71_1046

seq1  GAATTCCTCAGGAAGACTAAAGGTCCCATGAGAATAAAAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGAAGACTAAAGGTCCCATGAGAATAAAAAAAAAAAAAAA  50

seq1  AAAAAAAAAAGAAAGAAAGAAAAAAAAAAAAAAAAGAAAGGACAGTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAAGAAAGAAAAAAAAAAAAAAAAGAAAGGACAGTGCCT  100

seq1  TAGTCAGGGTTTGTGTTCCTGCACAAACCATCATGACTAAGAAGCAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGGTTTGTGTTCCTGCACAAACCATCATGACTAAGAAGCAAGTT  150

seq1  GGGGAGGAAAGGGTTTATTCAGCTTATACTTCCACATTGCTGTTCATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAAGGGTTTATTCAGCTTATACTTCCACATTGCTGTTCATCAC  200

seq1  CAAAGGAAGTCAGGTCAGGAACCCACACAGGGCAAGAACTTGGAGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAAGTCAGGTCAGGAACCCACACAGGGCAAGAACTTGGAGACAGG  250

seq1  AGCTGATGCAGAGGCCATGGAGGATGCTGCTTACTGGCTTGCTCAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCAGAGGCCATGGAGGATGCTGCTTACTGGCTTGCTCAGCCAG  300

seq1  GACTACCAACCCAGGGATGGCACCATCCACAACAGGCTGGGCCCTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCAACCCAGGGATGGCACCATCCACAACAGGCTGGGCCCTCCCCA  350

seq1  CCTCCTGATCACTAACTGAGAAAATGTCTTACTGCTGAATCTCATGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGATCACTAACTGAGAAAATGTCTTACTGCTGAATCTCATGGAGG  400

seq1  CATTTTCTCAAGGAGGCTCCTTTCTCTGTGACAACTCAAGCTTGTGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCAAGGAGGCTCCTTTCTCTGTGACAACTCAAGCTTGTGTCAA  450

seq1  GTTGACACACAAAACCAGCCAGTACAGACACACAGAGAAGCATAGAAGGC  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTGACACACAAAACCAGCCAGTACAGACACACAGAGAAGCATATAAGGC  500

seq1  CATGGCTACCTGGCACTACTGTTACAAAACATAGATAAAGCCAGGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTACCTGGCACTACTGTTACAAAACATAGATAAAGCCAGGGACAG  550

seq1  TGGTACACACCTGTCATCTCAGCAGACACTAGGAAGGCTGAAGTAGGAGA  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTACACACCTGTCATCTCAGCAGACACTAGGAAGGTTGAAGTAGGAGA  600

seq1  AGGGTAAGTGTGTGAGTTCAGGGTTCATCTGGGCAATGTCACGAAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGTGTGTGAGTTCAGGGTTCATCTGGGCAATGTCACGAAATTGT  650

seq1  CTCCCAAAGCTCAAACAACAGAAAGACTAAGATCTTTATACATGCTCCCC  700
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  CTCCCAAAGCTCAAACAACATAAAGACTCAGATCTTTATACATGCTCCCC  700

seq1  GGCAAACATTTGTCTTTGTCTCTTCTTTCTTTTTTCTGTTGTAAGAAGAG  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCAAACATTTGTCTTTGTCTCTTCTTTCTTTTATCTGTTGTAAGAAGAG  750

seq1  ATGAGAAAACTGAACAAGACATACAAACACTGATAATGGGCTGGTGACAG  800
      |||| |||||||||||| ||||| ||||||||||||||||||||||||||
seq2  ATGAAAAAACTGAACAA-ACATA-AAACACTGATAATGGGCTGGTGACAG  798

seq1  CTGAAAAAGAAAAGGGTTAAAAACCTGGGTTTGCTCCTGAAACCCCAGCT  850
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CTGAAAAAGAAAAGGG-TAAAAACCTGGGTTTGCTCCTGAAA-CCCAGCT  846

seq1  CACAGAATTAAAATGCCAAATAATGACGA-TATGAAACACCCCCCCCCAT  899
      ||||||||||||||| ||||| ||||||| |||||||||||||||||  |
seq2  CACAGAATTAAAATG-CAAAT-ATGACGATTATGAAACACCCCCCCCATT  894

seq1  GC-TTTGGCATGCTTTTTCACAGCATAAAGACTCCACATGTAAAAATCAA  948
      || ||||||||||||||||||||||  |||||| ||||||| |||||| |
seq2  GCTTTTGGCATGCTTTTTCACAGCAATAAGACTTCACATGT-AAAATC-A  942

seq1  ACACA-TAAATCTATACTTAGAAATA-TTTGTGC  980
      ||||| ||||||||  |||||||||| |||||||
seq2  ACACATTAAATCTAATCTTAGAAATATTTTGTGC  976