BAC Information

Click to search

BAC

Clone NameB6Ng01-006G14
Chromosome5 (Build37)
Map Location 18,590,981 - 18,688,520
singlet/doubletdoublet
Overlap genenone
Upstream geneGnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006G14.bB6Ng01-006G14.g
ACCDH843278DH843279
length1,0481,087
definitionDH843278|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G14, 5' end.DH843279|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,590,981 - 18,591,706)(18,687,419 - 18,688,520)
sequence
gaattcctgaactttctaagacttttctcatgaatgggtgttggattttg
tcaaaaatgctttctcagcatctaaagagatgatcatgtggtttttgtct
ttgagtctgtttatatagtggattatattgatagatttctgtatattata
ccatatctgcattccttgcatgaagcctacttgatcatgatgcaatatca
ttttgatgtgttcttggattcattttgtgagaattttattgagtattttt
gcatcgatattcataggagaaatttgtctgaagttctctttctttgttgg
atcattgtgtggtttatgtatcagagtaattgtgacctcatagaatatat
tgggtagagtaccttctgtttcaattttgtggaatagtttgaggagaatt
ggaattaggtcttctttgaaagtctgttagaactctgcactaaactaatc
tcgtcctgggcttttttggttgggagactattaatgactgcttctacttc
tttaggggatatgggactgtttagatggttaatctgatcctgatttaact
ttggtacctggtatctgcctagaaatttgtccatgttatccaggatttcc
agttttgttgagtataggctttttttgcattttgcattttctttgattgt
tgtgtccatatttttatggaatcttctgcacctgagattctaccttccat
ctcttgtattttgttgctgatgcttgcatctatggttcctgatttctggt
tttgggtctgcatctgtttccatcagttcctgaatggagcctctctgatg
ctcggctcttgtctgtaagtgtggctgagtattgttagaaattgtttcaa
aaaaaaaaaaaagaaattgtttcactttacttttctttcatttcttttct
tttcatcctctctcctcccattttccttctttcttattcctcctttctct
ttccctctctccctctcctcccacctttctcttttggtctggcaagtttg
ctctatctaagttctcggtttatgcacctctggttcattgcctccagg
gaattctctggtgggacttttcaggaagacagaacagtggagatagtttc
ttatcaagcttgcaaaacagagcagaagtgccctcaaaagagtgtatgag
gccgatttaggacatttgtcattctcccttgagaagtctgtgcccacact
tagatgactcctttccttgaggatagcctaagaggatgtttctcttaatc
cttttgcttaaaatttgttacaaatggtttcaatatgttataactctttt
ctgaacaacagactccattgtcatgggagttcgtcatctttccctgagca
cctttctttgtgtttttaataaacctcaactcaggttcatactggctcat
cctgaaatgatttcctgtctcaaagccaaggatctccttttacctgagtg
gagatctctagtagagcaagggaattcctcaggactctgagggcaatgat
gtggatgtgcctttgtccctgcctccactaaccacaatggaaggatcagt
ttaatcactttgcagatatcagtgtctttattaggaagcttttaggatat
ttaaccatgactccatattcagaaccatttcacaatcagtccatttaaag
tcaagttccatacaaatgcagcaaacttttctttgggtcttaggattggg
cagtaagaagatttcctgctgcgttgatatgtcttgctctcacctctgag
actgactgggaagtctgtcttttcctgtagcttgcctatagaatctcctt
aagtggtcagggcatgatgacccttatgttggcttctttgttctaatttg
ctactttgtagcacattttatgtctagcacacatcttgacaattttaggg
actcatgaaatttccctttttatattcatgtttttgatgtactgacattt
tggtggtggcatggggaaacaaatttcagtgttgtacctcttgtcatatt
tatcattaatatatgatgtatttttgcagtaaacatgtgctctgtgtttt
atttttatgtcattttgtcaatcatatttatatcttgaaatgaatatggt
ttcctagaacttcaaggagcatgtgtcatgtgaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18590981_18591706
seq2: B6Ng01-006G14.b_380_1090

seq1  TCATAGAATATATTGGGTAGAGTACCTTCTGTTTCAATTTTGTGGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAATATATTGGGTAGAGTACCTTCTGTTTCAATTTTGTGGAATAG  50

seq1  TTTGAGGAGAATTGGAATTAGGTCTTCTTTGAAAGTCTGTTAGAACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAGAATTGGAATTAGGTCTTCTTTGAAAGTCTGTTAGAACTCTG  100

seq1  CACTAAACTAATCTCGTCCTGGGCTTTTTTGGTTGGGAGACTATTAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACTAATCTCGTCCTGGGCTTTTTTGGTTGGGAGACTATTAATGA  150

seq1  CTGCTTCTACTTCTTTAGGGGATATGGGACTGTTTAGATGGTTAATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTACTTCTTTAGGGGATATGGGACTGTTTAGATGGTTAATCTGA  200

seq1  TCCTGATTTAACTTTGGTACCTGGTATCTGCCTAGAAATTTGTCCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTTAACTTTGGTACCTGGTATCTGCCTAGAAATTTGTCCATGTT  250

seq1  ATCCAGGATTTCCAGTTTTGTTGAGTATAGGCTTTTTTTGCATTTTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGATTTCCAGTTTTGTTGAGTATAGGCTTTTTTTGCATTTTGCAT  300

seq1  TTTCTTTGATTGTTGTGTCCATATTTTTATGGAATCTTCTGCACCTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGATTGTTGTGTCCATATTTTTATGGAATCTTCTGCACCTGAGA  350

seq1  TTCTACCTTCCATCTCTTGTATTTTGTTGCTGATGCTTGCATCTATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTCCATCTCTTGTATTTTGTTGCTGATGCTTGCATCTATGGTT  400

seq1  CCTGATTTCTGGTTTTGGGTCTGCATCTGTTTCCATCAGTTCCTGAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTCTGGTTTTGGGTCTGCATCTGTTTCCATCAGTTCCTGAATGG  450

seq1  AGCCTCTCTGATGCTCGGCTCTTGTCTGTAAGTGTGGCTGAGTATTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCTGATGCTCGGCTCTTGTCTGTAAGTGTGGCTGAGTATTGTTA  500

seq1  GAAATTGTTTCAAAAAAAAAAAAAAGAAATTGTTTCACTTTACTTTTCTT  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAATTGTTTCAAAAAAAAAAAAAAGAAATTGTTTCACTTTACTTTTC-T  549

seq1  TTCATTTCTTTTCTTTTTCTTCCTTCTCTCCTCCTATTTTTCCTTTCTTT  600
      ||||||||||||| ||||| ||| |||||||||| |||||  | ||||||
seq2  TTCATTTCTTTTC-TTTTCATCC-TCTCTCCTCCCATTTT--CCTTCTTT  595

seq1  CTTATTTCCTTCCTTTCTTCTTTCCCCTCTCTCCCCTCTCCTCCCACCTT  650
      ||||||  | ||||||| ||||| |||||||| |||||||||||||||||
seq2  CTTATT--CCTCCTTTC-TCTTT-CCCTCTCT-CCCTCTCCTCCCACCTT  640

seq1  TCTCTTTTTGGTCTGGCATGTTTGCTTCTATCCTAGGTCTCTGGTTTATG  700
      |||| ||||||||||||| |||||| ||||||  || |||| ||||||||
seq2  TCTC-TTTTGGTCTGGCAAGTTTGC-TCTATCTAAGTTCTC-GGTTTATG  687

seq1  CAGCCTCTGGTTCATTGCCTTCCAGG  726
      || |||||||||||||||| ||||||
seq2  CA-CCTCTGGTTCATTGCC-TCCAGG  711

seq1: chr5_18687419_18688520
seq2: B6Ng01-006G14.g_67_1153 (reverse)

seq1  ATTTTCACATGACACATGCTCTTAGAAGGTCTAGGGAAAACCATATTCAT  50
      ||||||||||||||||||||| | |||| ||||||  |||||||||||||
seq2  ATTTTCACATGACACATGCTCCTTGAAGTTCTAGG--AAACCATATTCAT  48

seq1  TTCAAAGATATTTAAAATATGGAATTTGACAAAAATGAACATAAAAATAA  100
      ||| |||||||   |||||||    ||||| |||||| ||||||||||||
seq2  TTC-AAGATAT---AAATATG---ATTGAC-AAAATG-ACATAAAAATAA  89

seq1  AAACCACAGAGCACATGTTTTACTGCAAAAATACATCATTATAATTAATG  150
      ||  ||||||||||||| |||||||||||||||||||| ||| |||||||
seq2  AA--CACAGAGCACATG-TTTACTGCAAAAATACATCA-TAT-ATTAATG  134

seq1  ATAAAATATGACAAAGAGTACAACACTG-AATTTGTTTCCCCATGCCAAC  199
      || |||||||||||   ||||||||||| |||||||||||||||||| ||
seq2  AT-AAATATGACAAGAGGTACAACACTGAAATTTGTTTCCCCATGCC-AC  182

seq1  CACCAAATTGTCAGTACATCAAAAACATGAATATAAAAAGGGAAATTTCA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAATGTCAGTACATCAAAAACATGAATATAAAAAGGGAAATTTCA  232

seq1  TGAGTCCCTAAAATTGTCAAGATGTGTGCTAGACAT-AAATGTGCTACAA  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGTCCCTAAAATTGTCAAGATGTGTGCTAGACATAAAATGTGCTACAA  282

seq1  AGTAGCAAATTAGAAC-AAGAAGCCAACATAAGGGTCATCATGCCCTGAC  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTAGCAAATTAGAACAAAGAAGCCAACATAAGGGTCATCATGCCCTGAC  332

seq1  CACTTAAGGAGATTCTATAGGCAAGCTACAGGAAAAGACAGACTTCCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGGAGATTCTATAGGCAAGCTACAGGAAAAGACAGACTTCCCAG  382

seq1  TCAGTCTCAGAGGTGAGAGCAAGACATATCAACGCAGCAGGAAATCTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCAGAGGTGAGAGCAAGACATATCAACGCAGCAGGAAATCTTCT  432

seq1  TACTGCCCAATCCTAAGACCCAAAGAAAAGTTTGCTGCATTTGTATGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCCAATCCTAAGACCCAAAGAAAAGTTTGCTGCATTTGTATGGAA  482

seq1  CTTGACTTTAAATGGACTGATTGTGAAATGGTTCTGAATATGGAGTCATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTTAAATGGACTGATTGTGAAATGGTTCTGAATATGGAGTCATG  532

seq1  GTTAAATATCCTAAAAGCTTCCTAATAAAGACACTGATATCTGCAAAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATATCCTAAAAGCTTCCTAATAAAGACACTGATATCTGCAAAGTG  582

seq1  ATTAAACTGATCCTTCCATTGTGGTTAGTGGAGGCAGGGACAAAGGCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTGATCCTTCCATTGTGGTTAGTGGAGGCAGGGACAAAGGCACA  632

seq1  TCCACATCATTGCCCTCAGAGTCCTGAGGAATTCCCTTGCTCTACTAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCATTGCCCTCAGAGTCCTGAGGAATTCCCTTGCTCTACTAGAG  682

seq1  ATCTCCACTCAGGTAAAAGGAGATCCTTGGCTTTGAGACAGGAAATCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACTCAGGTAAAAGGAGATCCTTGGCTTTGAGACAGGAAATCATT  732

seq1  TCAGGATGAGCCAGTATGAACCTGAGTTGAGGTTTATTAAAAACACAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGAGCCAGTATGAACCTGAGTTGAGGTTTATTAAAAACACAAAG  782

seq1  AAAGGTGCTCAGGGAAAGATGACGAACTCCCATGACAATGGAGTCTGTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCTCAGGGAAAGATGACGAACTCCCATGACAATGGAGTCTGTTG  832

seq1  TTCAGAAAAGAGTTATAACATATTGAAACCATTTGTAACAAATTTTAAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAAGAGTTATAACATATTGAAACCATTTGTAACAAATTTTAAGC  882

seq1  AAAAGGATTAAGAGAAACATCCTCTTAGGCTATCCTCAAGGAAAGGAGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATTAAGAGAAACATCCTCTTAGGCTATCCTCAAGGAAAGGAGTC  932

seq1  ATCTAAGTGTGGGCACAGACTTCTCAAGGGAGAATGACAAATGTCCTAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTGTGGGCACAGACTTCTCAAGGGAGAATGACAAATGTCCTAAA  982

seq1  TCGGCCTCATACACTCTTTTGAGGGCACTTCTGCTCTGTTTTGCAAGCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCTCATACACTCTTTTGAGGGCACTTCTGCTCTGTTTTGCAAGCTT  1032

seq1  GATAAGAAACTATCTCCACTGTTCTGTCTTCCTGAAAAGTCCCACCAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAAACTATCTCCACTGTTCTGTCTTCCTGAAAAGTCCCACCAGAG  1082

seq1  AATTC  1102
      |||||
seq2  AATTC  1087