BAC Information

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BAC

Clone NameB6Ng01-008A23
Chromosome5 (Build37)
Map Location 123,085,039 - 123,249,929
singlet/doubletdoublet
Overlap geneP2rx7, P2rx4, Camkk2, Anapc5
Upstream geneAcad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
Downstream geneRnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008A23.bB6Ng01-008A23.g
ACCDH844443DH844444
length1,099211
definitionDH844443|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A23, 5' end.DH844444|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,085,039 - 123,086,133)(123,249,719 - 123,249,929)
sequence
gaattcagggctagcttggtctacacagggctgcaggacagccagggctg
caaatgagagaccctgtctccaacaactacaaaattcttttgatttatgg
gagttagaggttgggaacccattcatcactagagtgagatttcttttagg
ctagctacactaacaaagaagctgtcagggcccttacaagcaggacagga
agaaaggatttaaaaaaaatggaacctcatcttatcaattatcagaagct
tcagtgccaaagaacttctagggcaaagttgctaggaggaagatgacaga
aagggtagcctgctggacctgtgacacagactgtagtggcgctagccaca
accacactgcagagcacgttggctataagtttaaaaaaaaaaaaggtcac
gtgactcaacgccagccaagcccttcttatttgctctgccactcagagca
cgtgatacagaagtcccgcctcttctcctgatcttttctgaataaaatct
ttcttcagaaggcccctccccatggtaaaatttccttcatgtttttttta
agtggccccatgagctttcatacccgatcacatccaggttaaacgggacc
agcttgatacaaccgagtggaggatagaggtatctttcccaagggcttca
aattaaattggggaatctgaaaggacaagtttggtggcacgtgactgaac
tctcagcgttgaggaggctccggcaggtggatcaggagttggatcgggag
ttgaaggcttgtctgggctgtgtagcaagacactgtctcaaaaaaataac
taaataatatccagacacgccttttaatcccagcactcaggaggcaggag
gcaggcagatctctggtgagtcaaggccagtcttgttctacagagtgagt
tccagcacatccaggaactgttacccagggaaaccttgtcagaaacaaac
aacaaacgagggatctgttatccaagaaaggaagagtggcctctgagtgg
gcatgaggggtgtctattacacctgggactggtaattgagaggtagaata
cattgatttgaacctgttctccatgcctgagttgacacttaaagcttac
cgtaatgaagggagcgcctctttaccagtcttgtttttgtatttcagata
attttttggcacggtgtgctctgaaacagctgccgacactggccactgcc
tgcattgccagagcagccggtgccaggatggcatcgggtctgaatttacc
cgtgaaacctaattagcatcctgtgacctcagggaacatcgagggtgggg
aggtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123085039_123086133
seq2: B6Ng01-008A23.b_30_1128

seq1  GAATTCAGGGCTAGCTTGGTCTACACAGGGCTGCAGGACAGCCAGGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCTAGCTTGGTCTACACAGGGCTGCAGGACAGCCAGGGCTG  50

seq1  CAAATGAGAGACCCTGTCTCCAACAACTACAAAATTCTTTTGATTTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGAGACCCTGTCTCCAACAACTACAAAATTCTTTTGATTTATGG  100

seq1  GAGTTAGAGGTTGGGAACCCATTCATCACTAGAGTGAGATTTCTTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGAGGTTGGGAACCCATTCATCACTAGAGTGAGATTTCTTTTAGG  150

seq1  CTAGCTACACTAACAAAGAAGCTGTCAGGGCCCTTACAAGCAGGACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTACACTAACAAAGAAGCTGTCAGGGCCCTTACAAGCAGGACAGGA  200

seq1  AGAAAGGATTTAAAAAAAATGGAACCTCATCTTATCAATTATCAGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATTTAAAAAAAATGGAACCTCATCTTATCAATTATCAGAAGCT  250

seq1  TCAGTGCCAAAGAACTTCTAGGGCAAAGTTGCTAGGAGGAAGATGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCAAAGAACTTCTAGGGCAAAGTTGCTAGGAGGAAGATGACAGA  300

seq1  AAGGGTAGCCTGCTGGACCTGTGACACAGACTGTAGTGGCGCTAGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGCCTGCTGGACCTGTGACACAGACTGTAGTGGCGCTAGCCACA  350

seq1  ACCACACTGCAGAGCACGTTGGCTATAAGTTTAAAAAAAAAAAAGGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTGCAGAGCACGTTGGCTATAAGTTTAAAAAAAAAAAAGGTCAC  400

seq1  GTGACTCAACGCCAGCCAAGCCCTTCTTATTTGCTCTGCCACTCAGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAACGCCAGCCAAGCCCTTCTTATTTGCTCTGCCACTCAGAGCA  450

seq1  CGTGATACAGAAGTCCCGCCTCTTCTCCTGATCTTTTCTGAATAAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATACAGAAGTCCCGCCTCTTCTCCTGATCTTTTCTGAATAAAATCT  500

seq1  TTCTTCAGAAGGCCCCTCCCCATGGTAAAATTTCCTTCATGTTTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAAGGCCCCTCCCCATGGTAAAATTTCCTTCATGTTTTTTTTA  550

seq1  AGTGGCCCCATGAGCTTTCATACCCGATCACATCCAGGTTAAACGGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCCATGAGCTTTCATACCCGATCACATCCAGGTTAAACGGGACC  600

seq1  AGCTTGATACAACCGAGTGGAGGATAGAGGTATCTTTCCCAAGGGCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATACAACCGAGTGGAGGATAGAGGTATCTTTCCCAAGGGCTTCA  650

seq1  AATTAAATTGGGGAATCTGAAAGGACAAGTTTGGTGGCACGTGACTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTGGGGAATCTGAAAGGACAAGTTTGGTGGCACGTGACTGAAC  700

seq1  TCTCAGCGTTGAGGAGGCTCCGGCAGGTGGATCAGGAGTTGGATCGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCGTTGAGGAGGCTCCGGCAGGTGGATCAGGAGTTGGATCGGGAG  750

seq1  TTGAAGGCTTGTCTGGGCTGTGTAGCAAGACACTGTCTC-AAAAAATAAC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGAAGGCTTGTCTGGGCTGTGTAGCAAGACACTGTCTCAAAAAAATAAC  800

seq1  TAAATAATATCCAGACACGCC-TTTAATCCCAGCACTCAGGAGGCA-GAG  847
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TAAATAATATCCAGACACGCCTTTTAATCCCAGCACTCAGGAGGCAGGAG  850

seq1  GCAGGCAGATCTCT-GTGAGTCAAGGCCAG-CCTGTTCTACAGAGTGAGT  895
      |||||||||||||| ||||||||||||||| | |||||||||||||||||
seq2  GCAGGCAGATCTCTGGTGAGTCAAGGCCAGTCTTGTTCTACAGAGTGAGT  900

seq1  TCCAGCACATCCAGG-ACTGTTACCCAGGGAAACCTTGTCAGAAACAAAC  944
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCAGCACATCCAGGAACTGTTACCCAGGGAAACCTTGTCAGAAACAAAC  950

seq1  AACAAACGAGGATTCTGTTATCCAAGAAAGGAAGAGTGGCCTCTGAGTGG  994
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AACAAACGAGGGATCTGTTATCCAAGAAAGGAAGAGTGGCCTCTGAGTGG  1000

seq1  GCCATGAGGGGTGTCTATTACACCTGGGGACTGGTAATTTGAGGAGGGTA  1044
      | ||||||||||||||||||||||| ||||||||||| |||||   ||||
seq2  G-CATGAGGGGTGTCTATTACACCT-GGGACTGGTAA-TTGAG--AGGTA  1045

seq1  GAAGACAGTGA-TTGAAACTGTTCTCCATGCCTGAGTTG--ACTTAGAGC  1091
      ||| ||| ||| ||||| |||||||||||||||||||||  ||||| |||
seq2  GAATACATTGATTTGAACCTGTTCTCCATGCCTGAGTTGACACTTAAAGC  1095

seq1  TTAC  1095
      ||||
seq2  TTAC  1099

seq1: chr5_123249719_123249929
seq2: B6Ng01-008A23.g_72_282 (reverse)

seq1  CACCCCCACCTCCCCACCCTCGATGTTCCCTGAGGTCACAGGATGCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACCTCCCCACCCTCGATGTTCCCTGAGGTCACAGGATGCTAAT  50

seq1  TAGGTTTCACGGGTAAATTCAGACCCGATGCCATCCTGGCACCGGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCACGGGTAAATTCAGACCCGATGCCATCCTGGCACCGGCTGCT  100

seq1  CTGGCAATGCAGGCAGTGGCCAGTGTCGGCAGCTGTTTCAGAGCACACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAATGCAGGCAGTGGCCAGTGTCGGCAGCTGTTTCAGAGCACACCG  150

seq1  TGCCAAAAAATTATCTGAAATACAAAAACAAGACTGGTAAAGAGGCGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAAAATTATCTGAAATACAAAAACAAGACTGGTAAAGAGGCGCTC  200

seq1  CCTTCATTACG  211
      |||||||||||
seq2  CCTTCATTACG  211