BAC Information

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BAC

Clone NameB6Ng01-008C16
Chromosome5 (Build37)15 (Build37)
Map Location 18,084,511 - 18,084,5756,084,115 - 6,085,255
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008C16.bB6Ng01-008C16.g
ACCDH844518DH844519
length9271,144
definitionDH844518|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C16, 5' end.DH844519|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(6,084,115 - 6,085,255)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctcgccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattgacaaa
gaaactcacacaatatgtactcactaataagtggatattagccccaaacc
taggatacccaagatatatgatataatttgctaaacacatgaaactcaag
aagaatgaagcactgaagtgtggacactatgcccctccttagatttggga
acaaaacacccatggaaggagttacagagacaaaaaaaaaaaaaaaaaaa
ttcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcc
tccattgttggtgggattgcaagcttgtacaacaactctggaaatcagtt
tggcagttacttagaaattggacagtactactgaaggatcccgcaatacc
tctcctggcatatatccagaagatgtc
gaattccccacctctaagccccttaccccataaaaccccctagcttttca
gcctcgtggctgacatccattatcttctgtgtaggttatgcctcatgtgc
ttacagcaagaaggattcttgtgtttttttgggtgcgctctctctcctga
gactagaggggggtccccgaaagggggtcttacagtttaggtctaaactg
tcctttataggctcgtttctacttgctttttcttctcactgattcttgat
tgaggttgctctgggatacatcacaagctcctccagtcatatacagagcc
agtgcagcagcatgccctcccactgtgatggattctatctcccaatccat
gatccaaagaaaactctgtgtcaggtccatgccacagtgatgagaaagat
aattagtacaacagtctacagcctcattaaattgcatgatatttaactat
atcaaatgttttgaaaaatatgttgctgaattaatataaggcactcataa
tactcctcacttgatatgttttttttttctacagagttggtattagtttt
aaaatcatttatttgaacttaggaatatgatcacattaataacccatttc
tgtcttattggcattgtcacaggattaaattcaccataaccacacaaaaa
aatccaaacccaaaccatatgctaagaaaattgaatacactgctagcttt
tgctttagagttttcataataatttatctgtgaataaaacatgtgtgcag
ttcatttatttttaacaaataaatattcaaactactgacaagaaaaagaa
taatggcaggatttctcccaaaacggaattcttttttttttttaagattt
atattatttttattatatataagtacattgtagctgtcttcaggacactt
ccagagaggggagtcagatcttatacagaatggttgtgagcctaccatgt
gttgctggatttgacctttaaaccttcggaagaacagtcgggtggttctt
acccactgagccatctcaccagcccccacctcagaacgagaattctaata
aagttccaagaaaattccttaatgtaatttgccaaagttctagcactggc
tgttcttttaaatggtatttttcattcctctgaatctaaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-008C16.b_365_429 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65

seq1: chr15_6084115_6085255
seq2: B6Ng01-008C16.g_70_1213 (reverse)

seq1  GAAATTAGGATTCAGAGGAAGGAAAAATACAAATCAAAAGAACAACCAGT  50
      ||||||  |||||||||||| ||||||||| | | ||||||||| |||||
seq2  GAAATTTAGATTCAGAGGAATGAAAAATACCATTTAAAAGAACAGCCAGT  50

seq1  GACTAGAAATTTTGGCAAAATTACATTAAAGAATTTTCTTGGAACTTTAT  100
      | |||| || |||||| |||||||||||| ||||||||||||||||||| 
seq2  G-CTAG-AACTTTGGC-AAATTACATTAAGGAATTTTCTTGGAACTTTA-  96

seq1  TTAGAATTCT-GTTTTGGGGTGGGGGCTGGTGAGATGGCTCAGTGGGTAA  149
      |||||||||| ||| || ||||||||||||||||||||||||||||||||
seq2  TTAGAATTCTCGTTCTGAGGTGGGGGCTGGTGAGATGGCTCAGTGGGTAA  146

seq1  G-AGCACCCGACTGCTCTTCCGAAGGTCTAAAGTTCAAATCCCAGCAACC  198
      | | |||||||||| |||||||||||| ||||| |||||| ||||||| |
seq2  GAACCACCCGACTGTTCTTCCGAAGGTTTAAAGGTCAAAT-CCAGCAA-C  194

seq1  ACATGGT-GGCTCACAACCATCCGTAATGAGATCTGACTCCCTCTTCTGG  247
      ||||||| ||||||||||||| |   || |||||||||||||   |||||
seq2  ACATGGTAGGCTCACAACCATTCTGTATAAGATCTGACTCCCCTCTCTGG  244

seq1  -AGTGT-CTGAAGACAGCTACAATGTACTTATATATAATAAAAATAA-AT  294
       ||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGTGTCCTGAAGACAGCTACAATGTACTTATATATAATAAAAATAATAT  294

seq1  AAATCTTAAAAAAAAAAAAGAATTCCGTTTTGGG-GAAATTCTGCCA-TA  342
      |||||||||||||||||||||||||||||||||| ||||| |||||| ||
seq2  AAATCTTAAAAAAAAAAAAGAATTCCGTTTTGGGAGAAATCCTGCCATTA  344

seq1  TTCTTTTTCTTGTCAGTAGTTTGAATATTTATTTGTT-AAAATAAATGAA  391
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCTTTTTCTTGTCAGTAGTTTGAATATTTATTTGTTAAAAATAAATGAA  394

seq1  CTGCACACATGTTTTATTCACAGATAAATTATTATGAAAACTCTAAAGCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACATGTTTTATTCACAGATAAATTATTATGAAAACTCTAAAGCA  444

seq1  AAAGCTAGCAGTGTATTCAATTTTCTTAGCATATGGTTTGGGTTTGGATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGCAGTGTATTCAATTTTCTTAGCATATGGTTTGGGTTTGGATT  494

seq1  TTTTTGTGTGGTTATGGTGAATTTAATCCTGTGACAATGCCAATAAGACA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGTGGTTATGGTGAATTTAATCCTGTGACAATGCCAATAAGACA  544

seq1  GAAATGGGTTATTAATGTGATCATATTCCTAAGTTCAAATAAATGATTTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGTTATTAATGTGATCATATTCCTAAGTTCAAATAAATGATTTT  594

seq1  AAAACTAATACCAACTCTGTAGAAAAAAAAAACATATCAAGTGAGGAGTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATACCAACTCTGTAGAAAAAAAAAACATATCAAGTGAGGAGTA  644

seq1  TTATGAGTGCCTTATATTAATTCAGCAACATATTTTTCAAAACATTTGAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTGCCTTATATTAATTCAGCAACATATTTTTCAAAACATTTGAT  694

seq1  ATAGTTAAATATCATGCAATTTAATGAGGCTGTAGACTGTTGTACTAATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAAATATCATGCAATTTAATGAGGCTGTAGACTGTTGTACTAATT  744

seq1  ATCTTTCTCATCACTGTGGCATGGACCTGACACAGAGTTTTCTTTGGATC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCATCACTGTGGCATGGACCTGACACAGAGTTTTCTTTGGATC  794

seq1  ATGGATTGGGAGATAGAATCCATCACAGTGGGAGGGCATGCTGCTGCACT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGGGAGATAGAATCCATCACAGTGGGAGGGCATGCTGCTGCACT  844

seq1  GGCTCTGTATATGACTGGAGGAGCTTGTGATGTATCCCAGAGCAACCTCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTATATGACTGGAGGAGCTTGTGATGTATCCCAGAGCAACCTCA  894

seq1  ATCAAGAATCAGTGAGAAGAAAAAGCAAGTAGAAACGAGCCTATAAAGGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAATCAGTGAGAAGAAAAAGCAAGTAGAAACGAGCCTATAAAGGA  944

seq1  CAGTTTAGACCTAAACTGTAAGACCCCCTTTCGGGGACCCCCCTCTAGTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGACCTAAACTGTAAGACCCCCTTTCGGGGACCCCCCTCTAGTC  994

seq1  TCAGGAGAGAGAGCGCACCCAAAAAAACACAAGAATCCTTCTTGCTGTAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAGAGAGCGCACCCAAAAAAACACAAGAATCCTTCTTGCTGTAA  1044

seq1  GCACATGAGGCATAACCTACACAGAAGATAATGGATGTCAGCCACGAGGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAGGCATAACCTACACAGAAGATAATGGATGTCAGCCACGAGGC  1094

seq1  TGAAAAGCTAGGGGGTTTTATGGGGTAAGGGGCTTAGAGGTGGGGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCTAGGGGGTTTTATGGGGTAAGGGGCTTAGAGGTGGGGAATTC  1144