BAC Information

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BAC

Clone NameB6Ng01-009E05
Chromosome5 (Build37)4 (Build37)
Map Location 121,106,637 - 121,107,611106,630,432 - 106,630,466
singlet/doubletsingletsinglet
Overlap geneRasal1
Upstream geneLOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886
Downstream geneDtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009E05.bB6Ng01-009E05.g
ACCDH845252DH845253
length97177
definitionDH845252|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E05, 5' end.DH845253|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,106,637 - 121,107,611)(106,630,432 - 106,630,466)
sequence
gaattccactgcaatgtcccgtcatggctggctcgcccatgaagcatctg
gggtgttggcaatgcattcccagcttaagcaattgcagcgagcagccggt
acttcctaacaatgtcacacattcaggtccctgtcagtcagagaaattcc
tgaaagttattgaagtttattctttgcatcaaacatacattcttatatgt
attctttttctgttgctttttgctttgattttttttttttttggatacaa
atttcctctgtgtagagctggctgtcctgctccctctgtagaccaggctg
gtctccaactcagagatctgcctgcctctgcctactgactgttgagacta
aaaggcgtgtgccaccagtgcccggcgttgtatgtgttctttttttaata
catctcagaccccatgagttttgaagagccaaagaaaataaggatgcctc
aggaaagggcacctgtgggtgctggtgcagggcgacattgtcctcatttt
gatggggcagagggatactacatacacactttactgctggggccaccagc
aaggagggcatatgctggtaagagtggcttccaaagctgggcttggggcg
catgcctgtcatcatagcatttgggaaggtgatacctcagttattcatca
ccatcatcaccaccatcatttttagtgctggaaacaaaccaatggttcta
tccctgagctgccccatctgcatatttgctggttattatattaaagccac
gggggctggagaggtggctcagcagttaagagtgaatgccgcagcccggc
ctttactttacagaccaggctggctttgaagtcttaagtctgcctctgcc
tcctcgagtctcgggattaaagtgtgggtcaccatgcctgatttttcttt
ctttctttttcttttttcgatcaaaacagggaagagattggaggctagtg
tcagaagttgggtggtatctt
ccggctagagtgggacatataataagatccagttggaaggaaggaaggaa
ggaaggaaggaaggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121106637_121107611
seq2: B6Ng01-009E05.b_45_1015

seq1  GAATTCCACTGCAATGTCCCGTCATGGCTGGCTCGCCCATGAAGCATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCAATGTCCCGTCATGGCTGGCTCGCCCATGAAGCATCTG  50

seq1  GGGTGTTGGCAATGCATTCCCAGCTTAAGCAATTGCAGCGAGCAGCCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGGCAATGCATTCCCAGCTTAAGCAATTGCAGCGAGCAGCCGGT  100

seq1  ACTTCCTAACAATGTCACACATTCAGGTCCCTGTCAGTCAGAGAAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAACAATGTCACACATTCAGGTCCCTGTCAGTCAGAGAAATTCC  150

seq1  TGAAAGTTATTGAAGTTTATTCTTTGCATCAAACATACATTCTTATATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTATTGAAGTTTATTCTTTGCATCAAACATACATTCTTATATGT  200

seq1  ATTCTTTTTCTGTTGCTTTTTGCTTTGATTTTTTTTTTTTTTGGATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTCTGTTGCTTTTTGCTTTGATTTTTTTTTTTTTTGGATACAA  250

seq1  ATTTCCTCTGTGTAGAGCTGGCTGTCCTGCTCCCTCTGTAGACCAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTGTGTAGAGCTGGCTGTCCTGCTCCCTCTGTAGACCAGGCTG  300

seq1  GTCTCCAACTCAGAGATCTGCCTGCCTCTGCCTACTGACTGTTGAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAACTCAGAGATCTGCCTGCCTCTGCCTACTGACTGTTGAGACTA  350

seq1  AAAGGCGTGTGCCACCAGTGCCCGGCGTTGTATGTGTTCTTTTTTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGTGCCACCAGTGCCCGGCGTTGTATGTGTTCTTTTTTTAATA  400

seq1  CATCTCAGACCCCATGAGTTTTGAAGAGCCAAAGAAAATAAGGATGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGACCCCATGAGTTTTGAAGAGCCAAAGAAAATAAGGATGCCTC  450

seq1  AGGAAAGGGCACCTGTGGGTGCTGGTGCAGGGCGACATTGTCCTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGCACCTGTGGGTGCTGGTGCAGGGCGACATTGTCCTCATTTT  500

seq1  GATGGGGCAGAGGGATACTACATACACACTTTACTGCTGGGGCCACCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCAGAGGGATACTACATACACACTTTACTGCTGGGGCCACCAGC  550

seq1  AAGGAGGGCATATGCTGGTAAGAGTGGCTTCCAAAGCTGGGCTTGGGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGCATATGCTGGTAAGAGTGGCTTCCAAAGCTGGGCTTGGGGCG  600

seq1  CATGCCTGTCATCATAGCATTTGGGAAGGTGATACCTCAGTTATTCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTCATCATAGCATTTGGGAAGGTGATACCTCAGTTATTCATCA  650

seq1  CCATCATCACCACCATCATTTTTAGTGCTGGAAACAAACCAATGGTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCACCACCATCATTTTTAGTGCTGGAAACAAACCAATGGTTCTA  700

seq1  TCCCTGAGCTGCCCCATCTGCATATTTGCTGGTTATTATATTAAAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGCTGCCCCATCTGCATATTTGCTGGTTATTATATTAAAGCCAC  750

seq1  GGGGGCTGGAGAGGTGGCTCAGCAGTTAAGAGTGAATGCCGCAGCCAGGC  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGGGCTGGAGAGGTGGCTCAGCAGTTAAGAGTGAATGCCGCAGCCCGGC  800

seq1  CTTCACTTCACAGACCAGGCTGGCTTTGAAGTCTTAAGCCTGCCTCTGCC  850
      ||| |||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CTTTACTTTACAGACCAGGCTGGCTTTGAAGTCTTAAGTCTGCCTCTGCC  850

seq1  TCC-CGAGTCCCGGGATTAAAGGTGTGGGTCACCATGCCTGATTTTTTTC  899
      ||| |||||| |||||||||| ||||||||||||||||||||  ||||||
seq2  TCCTCGAGTCTCGGGATTAAA-GTGTGGGTCACCATGCCTGA--TTTTTC  897

seq1  TTTCTTTCTTTTTCTTTTTTTGATCAAGACAGGGAAGAGATTGGAGGTCT  949
      |||||||||||||||||||| |||||| ||||||||||||||||||| ||
seq2  TTTCTTTCTTTTTCTTTTTTCGATCAAAACAGGGAAGAGATTGGAGG-CT  946

seq1  AGTGCCAGAAGCTGGGGTGGTAACTT  975
      |||| |||||| | |||||||| |||
seq2  AGTGTCAGAAG-TTGGGTGGTATCTT  971

seq1: chr4_106630432_106630466
seq2: B6Ng01-009E05.g_117_151 (reverse)

seq1  TCCCTCCCTCCCTCCTTCCTTCCTTCCTTCCTTCC  35
      |||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCTTCCTTCCTTCCTTCCTTCC  35