BAC Information

Click to search

BAC

Clone NameB6Ng01-010A23
Chromosome5 (Build37)
Map Location 84,904,172 - 84,905,271
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010A23.bB6Ng01-010A23.g
ACCDH845837DH845838
length1,094492
definitionDH845837|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A23, 5' end.DH845838|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacacttttatgattatacccatcattgctttacagttgagttt
tgtccctagtttttgattttgctttcttgagatgtgtaagttgttttccc
atttgtacctgcagaacttgtaatgtaagcaaacagagcaaaatgcctga
ctgcagccctctgcaggtagaaagaactgtttatttgggaacaaactgct
aggttgtctcaggagggatgacaacagtatcctagcaggagagaaagtag
ggttcttgggttcctggaggcttggggcaggttccttcacccagagaaaa
tatttcctgtattctgcagaacatatgtgattaaagtggatcagtttatg
ggcagcagaagtccttttgcctgtggcacatgactatgtagggaggaatc
aggaaactacagttacttgaaaatcaaagttcccaagtccctgggatgct
gagaaatgcttggggttaagtccttatgacctcctgctctggataggcta
aggctattctagggtattggcagatacactggcatcttaggggtctactt
tgcgacttcacagtaatgtaatttcactgcagtctttacatcaccattta
cttactttagtattttatcacttggctctcttatttttcaaaatgtccca
taccgcaaaccccaaaaaacaattatttaaacaatttggttagagtataa
gacgtttttcttaatctgaaattatttaacctatttaattatttaaaagt
tttaaaccattttaattttttaaattaaaattaagaaattcattgatctt
tagttagacagtatatacttagcatgatttgtagcttatgctaagtacac
attatgtaacacacatgtcttgcagttaacagcagaaattatatcacagt
gttcagctagttttcatgttttagagtatatgggtggaaatgaacagtgt
cacaatcaatctgtttgtcttttttccctaaatttctcctgttctgtgag
tcataggttcacactgacagctcaattctaaagcagatgaaaagtcgtta
gtaatcaaccaactccctcccttcttctaaaagcattgctctcc

caaaggaagaccaacagtgtcaactaacttgtatccttgtggctctcaga
aactgaaccactaatcaaagaccatactccgacagaacctaggcttctct
gaacatcagtgcagcttgttcttcatatggttcctggacaaatggagcag
gggctatcccaaaagctgttggctttacatgggatatttccttcttgttg
agttgccttgtctggcctcagtgggagaggatgcacctagtaaggtgaga
ccataccaaggggaaccctacctgctcgaatgagaaggggaaatcatagg
ggaagaattgtgggaggaggtgattgggagagggacagaaaatgggatgt
aaagtgaatgagtaaaataataagtaaaaagataattaattattcagact
gtttaataaagagcccctttgttaataactgaagtttaactttaaaaatt
aggatatattatctgttttttcgtaacatatacataattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84904172_84905271
seq2: B6Ng01-010A23.b_48_1141

seq1  GAATTCTACACTTTTATGATTATACCCATCATTGCTTTACAGTTGAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTTTTATGATTATACCCATCATTGCTTTACAGTTGAGTTT  50

seq1  TGTCCCTAGTTTTTGATTTTGCTTTCTTGAGATGTGTAAGTTGTTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTAGTTTTTGATTTTGCTTTCTTGAGATGTGTAAGTTGTTTTCCC  100

seq1  ATTTGTACCTGCAGAACTTGTAATGTAAGCAAACAGAGCAAAATGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACCTGCAGAACTTGTAATGTAAGCAAACAGAGCAAAATGCCTGA  150

seq1  CTGCAGCCCTCTGCAGGTAGAAAGAACTGTTTATTTGGGAACAAACTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCCTCTGCAGGTAGAAAGAACTGTTTATTTGGGAACAAACTGCT  200

seq1  AGGTTGTCTCAGGAGGGATGACAACAGTATCCTAGCAGGAGAGAAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCTCAGGAGGGATGACAACAGTATCCTAGCAGGAGAGAAAGTAG  250

seq1  GGTTCTTGGGTTCCTGGAGGCTTGGGGCAGGTTCCTTCACCCAGAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGGGTTCCTGGAGGCTTGGGGCAGGTTCCTTCACCCAGAGAAAA  300

seq1  TATTTCCTGTATTCTGCAGAACATATGTGATTAAAGTGGATCAGTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGTATTCTGCAGAACATATGTGATTAAAGTGGATCAGTTTATG  350

seq1  GGCAGCAGAAGTCCTTTTGCCTGTGGCACATGACTATGTAGGGAGGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGAAGTCCTTTTGCCTGTGGCACATGACTATGTAGGGAGGAATC  400

seq1  AGGAAACTACAGTTACTTGAAAATCAAAGTTCCCAAGTCCCTGGGATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTACAGTTACTTGAAAATCAAAGTTCCCAAGTCCCTGGGATGCT  450

seq1  GAGAAATGCTTGGGGTTAAGTCCTTATGACCTCCTGCTCTGGATAGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCTTGGGGTTAAGTCCTTATGACCTCCTGCTCTGGATAGGCTA  500

seq1  AGGCTATTCTAGGGTATTGGCAGATACACTGGCATCTTAGGGGTCTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTCTAGGGTATTGGCAGATACACTGGCATCTTAGGGGTCTACTT  550

seq1  TGCGACTTCACAGTAATGTAATTTCACTGCAGTCTTTACATCACCATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTTCACAGTAATGTAATTTCACTGCAGTCTTTACATCACCATTTA  600

seq1  CTTACTTTAGTATTTTATCACTTGGCTCTCTTATTTTTCAAAATGTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTAGTATTTTATCACTTGGCTCTCTTATTTTTCAAAATGTCCCA  650

seq1  TACCGCAAACCCCAAAAAACAATTATTTAAACAATTTGGTTAGAGTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCAAACCCCAAAAAACAATTATTTAAACAATTTGGTTAGAGTATAA  700

seq1  GACGTTTTTCTTAATCTGAAATTATTTAACCTATTTAATTATTTAAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTTTCTTAATCTGAAATTATTTAACCTATTTAATTATTTAAAAGT  750

seq1  TTTAAACCATTTTAATTTTTTAAATTAAAATTAAGAAATTCATTGATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCATTTTAATTTTTTAAATTAAAATTAAGAAATTCATTGATCTT  800

seq1  TAGTTAGACAGTATATACTTAGCATGATTTGTAGCTTATGCTAAGTACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGACAGTATATACTTAGCATGATTTGTAGCTTATGCTAAGTACAC  850

seq1  ATTATGTAACACACATGTCTTGCAGTTAACAGCAGAAATTATAATCACAG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTATGTAACACACATGTCTTGCAGTTAACAGCAGAAATTAT-ATCACAG  899

seq1  TGTTCAGCTAGTTTTCATGTTTTAGAGTATATGGGTGGAAATGAACAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTAGTTTTCATGTTTTAGAGTATATGGGTGGAAATGAACAGTG  949

seq1  TCACAATCAATCTGTTTGTTCCTTTTTTCCCTAAATTTCTCCTG-TCTGT  999
      |||||||||||||||||||  ||||||||||||||||||||||| |||||
seq2  TCACAATCAATCTGTTTGT--CTTTTTTCCCTAAATTTCTCCTGTTCTGT  997

seq1  GAGTCAATAAGGGTTCACACTGACAGCTCAAATCTAAAGCAGATGAAAAG  1049
      ||||| |||  |||||||||||||||||||| ||||||||||||||||||
seq2  GAGTC-ATA--GGTTCACACTGACAGCTCAATTCTAAAGCAGATGAAAAG  1044

seq1  TCGTTAGTAATCAACCAACTCCTCACTTTCTTCTAAAAAGCATTGCTCTC  1099
      ||||||||||||||||||||||   | ||||||| |||||||||||||||
seq2  TCGTTAGTAATCAACCAACTCCCTCCCTTCTTCT-AAAAGCATTGCTCTC  1093

seq1  C  1100
      |
seq2  C  1094


| Home | SequenceCutter | Blast | Download |