BAC Information

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BAC

Clone NameB6Ng01-010G02
Chromosome5 (Build37)
Map Location 84,499,218 - 84,631,601
singlet/doubletdoublet
Overlap geneEpha5, LOC100039489
Upstream geneSrd5a2l2, LOC100039608, LOC231368
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010G02.bB6Ng01-010G02.g
ACCDH846063DH846064
length1,116983
definitionDH846063|Mus musculus domesticus DNA, BAC clone: B6Ng01-010G02, 5' end.DH846064|Mus musculus domesticus DNA, BAC clone: B6Ng01-010G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,499,218 - 84,500,345)(84,630,625 - 84,631,601)
sequence
gaattcatgcaacttcattgtaagcaagaaattttactcagtttatttta
ctgggcatccaattaagctactagcatgatttcctttcttgtaaaagaca
tacaacagcattaaatacactgaaagtaataatctagtaaatttcataat
gtgaaagcaacttggtttttattagagggaacacttcaatatttttctga
taaagagaaaaatatattttccaaatactcaatattatttaaatgtattc
ctattgcagttcagaaaagtggaaactatggttattggcttaacacaaca
agattattcatttatcagttttaaatcttccaactgaatactaaatgatg
aaccaaatatctctgtgcaagcagataaagtcaaaagagtcctcactgtc
atcaatattcataaattgaatggtatggtgtaattatatgtaaatgacca
ttggtgaaatgtattctaaagagttcatgtgtaatcacagttagacatct
gtattaaaatgcaccagtgctttcttagcctcttataatctcatttcttt
taactgtatatatgctccaaacacgtttgaatcctgttttctaatgctat
ttcaatagagctctgtatttattttcatgacaatgacacattacacaact
aggtaggcaaaggtccttccaggtataattgttcactcttctgtttcttt
tcaagggggaaacattatggaagattagagttaaataaactaatgccata
cagattcacacatttaatacataactgactaaactgataaaatatgtatg
acatcaacctgattagatatactcatgaaaattattcagtctggcttggt
acctgctcgacgcattcaccagtgtctcagactacttgggtttcgtatca
gtttgtccagcatgttgacgatttctcaaactgggcctgctgttcgatct
ttctggcctgcaatccagctttatttgataaagagcacatgggaattcat
ggggcttgggcaggctgtagccttctctactgccttgatccctgggcaag
tataaaaagaccatggccaaccccacaaggtatcagaatagtctgaatca
acctttgtcttaattt
gaattcatttggcatatgaatgaaccttgtatatgtacttacacacataa
aagatacaacatttaaagtgatattttacattttgttatgattcatctct
ggggaaggaaagaaaatataagaatagaagaaagaaaggttcagaaataa
accacagaaactgatgctgagaagagacaaggtgatcaagatgtgcctct
ggcagaatttccctttggtgaacctttagaggttggcattgtcttcttca
gccattctgccaaatcactgctagaatttacttagattacctccattttt
aaggtcagtttgcatacaatttttcattccgattcaaccttccctttaac
acatttctctgtgctcactgctttcctcttggcagtctctactggccagt
aaccccaaataaaaaaaatcctttgtcaatggttttgaaacttattttaa
atttaaaattagaagcaagactttccttccttccttccttccttccttac
atacatacttccttccttccttccttctttcctttcttcctttcttcctt
tcttccctttcctcctctctttctttcacttgaaaatagattattctttc
atacaactcttcctgaccacagttttccctccctccactacttgcttccc
ttggataccctccccttccattccctttgaaaagtagcagacctcctaga
gacaacaaaatacaacaacaaccaacaaagataagtttcaggcactgcat
gaagccctcaatcaatgctgggaccagcaaactctttcagctgaacttaa
taaaggcatacaataaaagatatgtgtttagtaaggcatgttttaaaatt
agtttggtttttatttttctttgtagttttattctttttaaccggcactt
taaataatcttagtaatcctgggggttttaatagtctccatatttgtgtt
tcagactatatttacttaaagtgggaaataagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84499218_84500345
seq2: B6Ng01-010G02.b_34_1149

seq1  GAATTCATGCAACTTCATTGTAAGCAAGAAATTTTACTCAGTTTATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAACTTCATTGTAAGCAAGAAATTTTACTCAGTTTATTTTA  50

seq1  CTGGGCATCCAATTAAGCTACTAGCATGATTTCCTTTCTTGTAAAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATCCAATTAAGCTACTAGCATGATTTCCTTTCTTGTAAAAGACA  100

seq1  TACAACAGCATTAAATACACTGAAAGTAATAATCTAGTAAATTTCATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGCATTAAATACACTGAAAGTAATAATCTAGTAAATTTCATAAT  150

seq1  GTGAAAGCAACTTGGTTTTTATTAGAGGGAACACTTCAATATTTTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCAACTTGGTTTTTATTAGAGGGAACACTTCAATATTTTTCTGA  200

seq1  TAAAGAGAAAAATATATTTTCCAAATACTCAATATTATTTAAATGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAAAAATATATTTTCCAAATACTCAATATTATTTAAATGTATTC  250

seq1  CTATTGCAGTTCAGAAAAGTGGAAACTATGGTTATTGGCTTAACACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAGTTCAGAAAAGTGGAAACTATGGTTATTGGCTTAACACAACA  300

seq1  AGATTATTCATTTATCAGTTTTAAATCTTCCAACTGAATACTAAATGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTCATTTATCAGTTTTAAATCTTCCAACTGAATACTAAATGATG  350

seq1  AACCAAATATCTCTGTGCAAGCAGATAAAGTCAAAAGAGTCCTCACTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATATCTCTGTGCAAGCAGATAAAGTCAAAAGAGTCCTCACTGTC  400

seq1  ATCAATATTCATAAATTGAATGGTATGGTGTAATTATATGTAAATGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTCATAAATTGAATGGTATGGTGTAATTATATGTAAATGACCA  450

seq1  TTGGTGAAATGTATTCTAAAGAGTTCATGTGTAATCACAGTTAGACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAATGTATTCTAAAGAGTTCATGTGTAATCACAGTTAGACATCT  500

seq1  GTATTAAAATGCACCAGTGCTTTCTTAGCCTCTTATAATCTCATTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAATGCACCAGTGCTTTCTTAGCCTCTTATAATCTCATTTCTTT  550

seq1  TAACTGTATATATGCTCCAAACACGTTTGAATCCTGTTTTCTAATGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTATATATGCTCCAAACACGTTTGAATCCTGTTTTCTAATGCTAT  600

seq1  TTCAATAGAGCTCTGTATTTATTTTCATGACAATGACACATTACACAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGAGCTCTGTATTTATTTTCATGACAATGACACATTACACAACT  650

seq1  AGGTAGGCAAAGGTCCTTCCAGGTATAATTGTTCACTCTTCTGTTTC-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTAGGCAAAGGTCCTTCCAGGTATAATTGTTCACTCTTCTGTTTCTTT  700

seq1  TCAAGGGGGAAACATTATGGAAGATTAGAGTTAAATAAACTAATGCCATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGGAAACATTATGGAAGATTAGAGTTAAATAAACTAATGCCATA  750

seq1  CAGATTCACACA-TTAATACATAACTGACTAAACTGATAAAATATGTATG  798
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGATTCACACATTTAATACATAACTGACTAAACTGATAAAATATGTATG  800

seq1  ACATCAACCTGATTAGATATACTCATGAAAATTATTCAAGTCTGGCTTGG  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATCAACCTGATTAGATATACTCATGAAAATTATTC-AGTCTGGCTTGG  849

seq1  TACCTGCTCGACGCATTCACCAGTGTCTTCAGACTACTTGGGTTTCGTAT  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACCTGCTCGACGCATTCACCAGTGTC-TCAGACTACTTGGGTTTCGTAT  898

seq1  CAGTTTGTCCAGCATGTTGACGATTTCATCAAACTTGGGCCTGCTGTTTC  948
      ||||||||||||||||||||||||||| |||||| ||||||||||| |||
seq2  CAGTTTGTCCAGCATGTTGACGATTTC-TCAAAC-TGGGCCTGCTG-TTC  945

seq1  GATCTTTCT-GCCAGCAATCCAGCATTAATTGATAGAGAGCAGCAGGGCA  997
      ||||||||| ||| |||||||||| ||| |||||| |||||| || || |
seq2  GATCTTTCTGGCCTGCAATCCAGCTTTATTTGATAAAGAGCA-CATGGGA  994

seq1  ATCCATGGGGCTT-GGCAGGCGGTAGCCTTCTTCTACTGCCTTGATCACC  1046
      || |||||||||| ||||||| ||||||||| ||||||||||||||| ||
seq2  ATTCATGGGGCTTGGGCAGGCTGTAGCCTTC-TCTACTGCCTTGATC-CC  1042

seq1  TGTGCAAAGTAAAAAGAGAACCAGGTCCACACCACCAACAAGGCAACACA  1096
      || || ||||| ||| || |||| | ||| ||  || |||||| |   ||
seq2  TGGGC-AAGTATAAAAAG-ACCATGGCCA-AC--CCCACAAGGTA--TCA  1085

seq1  GAAGAGTCTGAAAAACAACCTTTGTC-TAATTT  1128
      ||| ||||||  || ||||||||||| ||||||
seq2  GAATAGTCTG--AATCAACCTTTGTCTTAATTT  1116

seq1: chr5_84630625_84631601
seq2: B6Ng01-010G02.g_67_1049 (reverse)

seq1  ACTTATTTCCACTTTTAAGTAAAAATAGTCTG-AACACAAATCTTGGGAC  49
      ||||||||||   |||||||||| |||||||| ||||||||| | | |||
seq2  ACTTATTTCCCACTTTAAGTAAATATAGTCTGAAACACAAATATGGAGAC  50

seq1  TATT-ATACTCCCAGGATTTACTATGATTATTTAAAGTG-CAGTTAAAAA  97
      |||| | || ||||||| |||||| |||||||||||||| | ||||||||
seq2  TATTAAAACCCCCAGGA-TTACTAAGATTATTTAAAGTGCCGGTTAAAAA  99

seq1  GAACTAAAACTAC--ATGAAAATAAAAACCAACCTTATTTT-AAACATGC  144
      ||| |||||||||  |  |||||||||||||| || ||||| ||||||||
seq2  GAA-TAAAACTACAAAGAAAAATAAAAACCAAACTAATTTTAAAACATGC  148

seq1  CCTACTAAACACATATCTTTACTTGTATGCCTTTATTAAG-TCAGCTTGA  193
      | ||||||||||||||||||  |||||||||||||||||| ||||| |||
seq2  CTTACTAAACACATATCTTTTATTGTATGCCTTTATTAAGTTCAGC-TGA  197

seq1  AAGAGTTGCCTGGT-CCAGCATTGATTTGAGGGC-TCATGCAGTGCCTG-  240
      |||||||  ||||| |||||||||| |||||||| |||||||||||||| 
seq2  AAGAGTTTGCTGGTCCCAGCATTGA-TTGAGGGCTTCATGCAGTGCCTGA  246

seq1  AACTTATCTTTTGTTGTTGTTGTTGTATTTTGTTGTCTCTTGGAGGTCTG  290
      |||||||||||  | ||||||||||||||||||||||||| |||||||||
seq2  AACTTATCTTTGTTGGTTGTTGTTGTATTTTGTTGTCTCTAGGAGGTCTG  296

seq1  CTACTTTTCAAAGGGAATGGAAGGGGAGGGTATCCAAGGGAAGCAAGTAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCAAAGGGAATGGAAGGGGAGGGTATCCAAGGGAAGCAAGTAG  346

seq1  TGGAGGGAGGGAAAACTGTGGTCAGGAAGAGTTGTATGAAAGAATAATCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAGGGAAAACTGTGGTCAGGAAGAGTTGTATGAAAGAATAATCT  396

seq1  ATTTTCAAGTGAAAGAAAGAGAGGAGGAAAGGGAAGAAAGGAAGAAAGGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGTGAAAGAAAGAGAGGAGGAAAGGGAAGAAAGGAAGAAAGGA  446

seq1  AGAAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  490
      |||||||||||||||||||||||||||||| | | | | |||||||||||
seq2  AGAAAGGAAAGAAGGAAGGAAGGAAGGAAGTATGTATGTAAGGAAGGAAG  496

seq1  GAAGGAAGGAAGGAAAGTCTTGCTTCTAATTTTAAATTTAAAATAAGTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAAGTCTTGCTTCTAATTTTAAATTTAAAATAAGTTT  546

seq1  CAAAACCATTGACAAAGGATTTTTTTTATTTGGGGTTACTGGCCAGTAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATTGACAAAGGATTTTTTTTATTTGGGGTTACTGGCCAGTAGA  596

seq1  GACTGCCAAGAGGAAAGCAGTGAGCACAGAGAAATGTGTTAAAGGGAAGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCAAGAGGAAAGCAGTGAGCACAGAGAAATGTGTTAAAGGGAAGG  646

seq1  TTGAATCGGAATGAAAAATTGTATGCAAACTGACCTTAAAAATGGAGGTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCGGAATGAAAAATTGTATGCAAACTGACCTTAAAAATGGAGGTA  696

seq1  ATCTAAGTAAATTCTAGCAGTGATTTGGCAGAATGGCTGAAGAAGACAAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTAAATTCTAGCAGTGATTTGGCAGAATGGCTGAAGAAGACAAT  746

seq1  GCCAACCTCTAAAGGTTCACCAAAGGGAAATTCTGCCAGAGGCACATCTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTCTAAAGGTTCACCAAAGGGAAATTCTGCCAGAGGCACATCTT  796

seq1  GATCACCTTGTCTCTTCTCAGCATCAGTTTCTGTGGTTTATTTCTGAACC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCTTGTCTCTTCTCAGCATCAGTTTCTGTGGTTTATTTCTGAACC  846

seq1  TTTCTTTCTTCTATTCTTATATTTTCTTTCCTTCCCCAGAGATGAATCAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTCTATTCTTATATTTTCTTTCCTTCCCCAGAGATGAATCAT  896

seq1  AACAAAATGTAAAATATCACTTTAAATGTTGTATCTTTTATGTGTGTAAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGTAAAATATCACTTTAAATGTTGTATCTTTTATGTGTGTAAG  946

seq1  TACATATACAAGGTTCATTCATATGCCAAATGAATTC  977
      |||||||||||||||||||||||||||||||||||||
seq2  TACATATACAAGGTTCATTCATATGCCAAATGAATTC  983