BAC Information

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BAC

Clone NameB6Ng01-010H02
Chromosome5 (Build37)
Map Location 88,266,095 - 88,355,394
singlet/doubletdoublet
Overlap gene4930432K09Rik, EG654494, Odam, BC037156, Csn3
Upstream geneLOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b
Downstream geneBC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010H02.bB6Ng01-010H02.g
ACCDH846110DH846111
length1,1181,087
definitionDH846110|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H02, 5' end.DH846111|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,354,263 - 88,355,394)(88,266,095 - 88,267,184)
sequence
gaattccttgttaaatccattattttctaattaccttttcaaatcattac
ctgaaaaataatatttctttgttttaatcacagactcctcttcaataatt
aaagaatatattttaatatttattttatttttacattaacacttcattat
agatatcacattgcataatatataacacatataaacatatgtaacattat
atatattaacattaaatgataagaactccttttcagtagaaagctaagat
tttactttatagcagatacatagtggtatatgcttgtgtttgttgctgtc
actttctaaggagacatgatttttgaaaatatgaattaaattagctttga
aaggcatgttataatataatataataagatatgatatgatatgtaattac
actataataaaaggaattatgagttttaggtagagataagatttgaagat
aattattggactattttgagtattatagttctatctttctgaaaaattaa
ccctctctttttatagcagtagtaggcttactataaatattatagttaac
aatgtctcatataatttgacagtatcaaacctagactttaagacaaagca
tagttaaaggaaatgtgattccaaaataaccttgatggtttccgaagtag
ctactctacatcatcactgccctgggcagatggttagttacctttatttg
gagtcaattcttgcttggcagtagggtttgcccggcctcttagctgcaga
gaagacccaagataaataacggagactaattacagggtattagtaccggt
agtcagatctcatttccctcctacttttcacccaataggatgatgacaga
aaggcaagatttgaggtcaccagggtcacctgcaggtcagtcttagtcag
cacacagcaagccggaaacagatgtgagtcataagcatgcagggaaaaca
accaaactcttaaagaatgaattgtcctgtgctttctaaaatatagaaat
gtaaacaaatgtactattgcattcttacctttatcatttcatcttagtga
aactaaagttattgcttaaaataaattaaacccatagccacatattttca
cattagtgttttacttga
gaattcagaagacataacaaagttttatgaaaaaaaaaaaaaaaaaaaaa
aaaagaaaataatgcatagttctacaaaatggcactagaccacacacaca
tgcacacacatacatatatatacacacacatgcacactcacacacataca
tatacatgcacacaaacacacacacacacatacatacatacacacatata
cacacatgcagacacacacacacacacacacacacacacacacacacggg
cgtgcggcaacattaaagtggtaaaacaacatgcatgcatgagagccaaa
tggcctctcacatggcaaagatttacctgcatacacaatgatgcaaacta
aacactttttagtcaaaataaaagcccctgttgaaaacatcataatgatt
atgatgtcaattcttcagaccagggactcatagtcaaggaaacaatgatg
ataagacgatgcaaattcttcagtaaaaggaaagtctgaatgcagttgtt
ctcaaatagccacactaaaatatttttctttgttttagagacgttatcct
ttcattcataaggtaaaacaattcaatttctttaaaaattatcattttca
cttataggttatattttcacttatagattctctattttctgggcaatgca
attgactttaattgatcttaaaatattgttttattaatttcttcagataa
ggtgaaaaaaagcatagaatatacactatgccaaacatatttgccagcaa
accttcatttctgatgaccagaagcatagaatgaactccttttatggtgg
aataaaagtctgttatgtctcgatttacctttatacctctatgatatttc
tgaatttgtacttaagcaatataaccaatgagaaatgatggcatgagaga
ttagaacagaagaaagcaagatactgagcagctatatattcattatttat
ttttatttgcatatgggttgtttgtttcttttaaggaggtagagaaaggg
cctcatgtagcccaggctgaccttcaatgctctgtggtctctaagcatga
tctaactttcatcctccttgcctccacctccatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88354263_88355394
seq2: B6Ng01-010H02.b_45_1162 (reverse)

seq1  TCAAGTAAAAACACTTAAAATGTGAAAAATAATTGTGGCTATTGGGTTTT  50
      |||||| ||||||||   |||||| ||||||  |||||||||  || |||
seq2  TCAAGT-AAAACACT---AATGTG-AAAATA--TGTGGCTAT--GGGTTT  41

seq1  AATTTTATTTTAGCAATAACTTTAGTTTCAACTAGATGAAATGATAGAGG  100
      |||||  ||| |||||||||||||||||||   ||||||||||||| |||
seq2  AATTTATTTTAAGCAATAACTTTAGTTTCACTAAGATGAAATGATAAAGG  91

seq1  TTAAGAATGCAATTAGTACATTTGTATACATTTTCCTATATTTTTAGAAA  150
       ||||||||||| |||||||||||| |||||||  ||||| |||||||||
seq2  -TAAGAATGCAA-TAGTACATTTGTTTACATTT--CTATA-TTTTAGAAA  136

seq1  GCACAGGAC-ATTCATTCTTTAAGGAGTTTGGTTGTTTTCCCTGCATGCT  199
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  GCACAGGACAATTCATTCTTTAA-GAGTTTGGTTGTTTTCCCTGCATGCT  185

seq1  TATGACTCACATCTGTTTCCGGCCTGCTGTGTGCTGACTAAGACTGACCT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATGACTCACATCTGTTTCCGGCTTGCTGTGTGCTGACTAAGACTGACCT  235

seq1  GCAGGTGACCCTGGTGACCTCAAATCTTGCCTTTCTGTCATCATCCTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGACCCTGGTGACCTCAAATCTTGCCTTTCTGTCATCATCCTATT  285

seq1  GGGTGAAAAGTAGGAGGGAAATGAGATCTGACTACCGGTACTAATACCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAAAGTAGGAGGGAAATGAGATCTGACTACCGGTACTAATACCCT  335

seq1  GTAATTAGTCTCCGTTATTTATCTTGGGTCTTCTCTGCAGCTAAGAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGTCTCCGTTATTTATCTTGGGTCTTCTCTGCAGCTAAGAGGCC  385

seq1  GGGCAAACCCTACTGCCAAGCAAGAATTGACTCCAAATAAAGGTAACTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACCCTACTGCCAAGCAAGAATTGACTCCAAATAAAGGTAACTAA  435

seq1  CCATCTGCCCAGGGCAGTGATGATGTAGAGTAGCTACTTCGGAAACCATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCCCAGGGCAGTGATGATGTAGAGTAGCTACTTCGGAAACCATC  485

seq1  AAGGTTATTTTGGAATCACATTTCCTTTAACTATGCTTTGTCTTAAAGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATTTTGGAATCACATTTCCTTTAACTATGCTTTGTCTTAAAGTC  535

seq1  TAGGTTTGATACTGTCAAATTATATGAGACATTGTTAACTATAATATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTGATACTGTCAAATTATATGAGACATTGTTAACTATAATATTTA  585

seq1  TAGTAAGCCTACTACTGCTATAAAAAGAGAGGGTTAATTTTTCAGAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGCCTACTACTGCTATAAAAAGAGAGGGTTAATTTTTCAGAAAGA  635

seq1  TAGAACTATAATACTCAAAATAGTCCAATAATTATCTTCAAATCTTATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATAATACTCAAAATAGTCCAATAATTATCTTCAAATCTTATCT  685

seq1  CTACCTAAAACTCATAATTCCTTTTATTATAGTGTAATTACATATCATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAAACTCATAATTCCTTTTATTATAGTGTAATTACATATCATAT  735

seq1  CATATCTTATTATATTATATTATAACATGCCTTTCAAAGCTAATTTAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTATTATATTATATTATAACATGCCTTTCAAAGCTAATTTAATT  785

seq1  CATATTTTCAAAAATCATGTCTCCTTAGAAAGTGACAGCAACAAACACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCAAAAATCATGTCTCCTTAGAAAGTGACAGCAACAAACACAA  835

seq1  GCATATACCACTATGTATCTGCTATAAAGTAAAATCTTAGCTTTCTACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACCACTATGTATCTGCTATAAAGTAAAATCTTAGCTTTCTACTG  885

seq1  AAAAGGAGTTCTTATCATTTAATGTTAATATATATAATGTTACATATGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGTTCTTATCATTTAATGTTAATATATATAATGTTACATATGTT  935

seq1  TATATGTGTTATATATTATGCAATGTGATATCTATAATGAAGTGTTAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTTATATATTATGCAATGTGATATCTATAATGAAGTGTTAATG  985

seq1  TAAAAATAAAATAAATATTAAAATATATTCTTTAATTATTGAAGAGGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAATAAATATTAAAATATATTCTTTAATTATTGAAGAGGAGT  1035

seq1  CTGTGATTAAAACAAAGAAATATTATTTTTCAGGTAATGATTTGAAAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTAAAACAAAGAAATATTATTTTTCAGGTAATGATTTGAAAAGG  1085

seq1  TAATTAGAAAATAATGGATTTAACAAGGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  TAATTAGAAAATAATGGATTTAACAAGGAATTC  1118

seq1: chr5_88266095_88267184
seq2: B6Ng01-010H02.g_64_1150

seq1  GAATTCAGAAGACATAACAAAGTTTTATGAAAAAAAAAAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACATAACAAAGTTTTATGAAAAAAAAAAAAAAAAAAAAA  50

seq1  AAAAGAAAATAATGCATAGTTCTACAAAATGGCACTAGACCACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATAATGCATAGTTCTACAAAATGGCACTAGACCACACACACA  100

seq1  TGCACACACATACATATATATACACACACATGCACACTCACACACATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACATACATATATATACACACACATGCACACTCACACACATACA  150

seq1  TATACATGCACACAAACACACACACACACATACATACATACACACATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCACACAAACACACACACACACATACATACATACACACATATA  200

seq1  CACACATGCAGACACACACACACACACACACACACACACACACACACGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCAGACACACACACACACACACACACACACACACACACACGGG  250

seq1  CGTGCGGCAACATTAAAGTGGTAAAACAACATGCATGCATGAGAGCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGGCAACATTAAAGTGGTAAAACAACATGCATGCATGAGAGCCAAA  300

seq1  TGGCCTCTCACATGGCAAAGATTTACCTGCATACACAATGATGCAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTCACATGGCAAAGATTTACCTGCATACACAATGATGCAAACTA  350

seq1  AACACTTTTTAGTCAAAATAAAAGCCCCTGTTGAAAACATCATAATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTTAGTCAAAATAAAAGCCCCTGTTGAAAACATCATAATGATT  400

seq1  ATGATGTCAATTCTTCAGACCAGGGACTCATAGTCAAGGAAACAATGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCAATTCTTCAGACCAGGGACTCATAGTCAAGGAAACAATGATG  450

seq1  ATAAGACGATGCAAATTCTTCAGTAAAAGGAAAGTCTGAATGCAGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACGATGCAAATTCTTCAGTAAAAGGAAAGTCTGAATGCAGTTGTT  500

seq1  CTCAAATAGCCACACTAAAATATTTTTCTTTGTTTTAGAGACGTTATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATAGCCACACTAAAATATTTTTCTTTGTTTTAGAGACGTTATCCT  550

seq1  TTCATTCATAAGGTAAAACAATTCAATTTCTTTAAAAATTATCATTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATAAGGTAAAACAATTCAATTTCTTTAAAAATTATCATTTTCA  600

seq1  CTTATAGGTTATATTTTCACTTATAGATTCTCTATTTTCTGGGCAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGTTATATTTTCACTTATAGATTCTCTATTTTCTGGGCAATGCA  650

seq1  ATTGACTTTAATTGATCTTAAAATATTGTTTTATTAATTTCTTCAGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTTAATTGATCTTAAAATATTGTTTTATTAATTTCTTCAGATAA  700

seq1  GGTGAAAAAAAGCATAGAATATACACTATGCCAAACATATTTGCCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAAAAGCATAGAATATACACTATGCCAAACATATTTGCCAGCAA  750

seq1  ACCTTCATTTCTGATGACCAGAAGCATAGAATGAACTCCTTTTATGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTTCTGATGACCAGAAGCATAGAATGAACTCCTTTTATGGTGG  800

seq1  AATAAAAGTCTGTTATGTCTCGATTTACCTTTATACCTCTATGATATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTCTGTTATGTCTCGATTTACCTTTATACCTCTATGATATTTC  850

seq1  TGAATTTGTACTTAAGCAATATAACCAATGAGAAAATGATGGCATGAGAG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAATTTGTACTTAAGCAATATAACCAATGAG-AAATGATGGCATGAGAG  899

seq1  ATTAGAACAGAAGAAAGCAAGATACTGAGCAGCTATATATTCAATTATTT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTAGAACAGAAGAAAGCAAGATACTGAGCAGCTATATATTC-ATTATTT  948

seq1  A-TTTTATTTGCATATGGGTTGTTTGTTTTCTTTTAAGGAGGTAGAGAAA  999
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTTTATTTGCATATGGGTTGTTTG-TTTCTTTTAAGGAGGTAGAGAAA  997

seq1  GGGCCTCATGTAGCCCAGGCTGACCTTCAATGCTCTGT-GTCTCTAAGCA  1048
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGCCTCATGTAGCCCAGGCTGACCTTCAATGCTCTGTGGTCTCTAAGCA  1047

seq1  TGATCTTAACTTTTCATCCTCC-TGCCTCCACCTCCCATGAGT  1090
      ||||| |||| ||||||||||| ||||||||||| ||||||||
seq2  TGATC-TAAC-TTTCATCCTCCTTGCCTCCACCT-CCATGAGT  1087