BAC Information

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BAC

Clone NameB6Ng01-010H12
Chromosome5 (Build37)
Map Location 35,130,997 - 35,295,854
singlet/doubletdoublet
Overlap geneHdh, A930005I04Rik, Rgs12
Upstream geneWhsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l
Downstream geneHgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010H12.bB6Ng01-010H12.g
ACCDH846130DH846131
length1,009780
definitionDH846130|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H12, 5' end.DH846131|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,294,843 - 35,295,854)(35,130,997 - 35,131,773)
sequence
gaattctatacccagctaaactaaaaggaactagactgcaaaaaggataa
cttcaaaatcaagaggtaggggctctatgttatatttcttagctaccaaa
aatgtagaattttagcaaaacaaggatggagctgggatcagacaaggaac
ctgacacataggaacccagcacagagcagtactgcacaggcagctctagt
tgacagctctatgcagatcttgggacttcagaacagacaggagcagagtc
ttccaatatcacctgctgtggggtggactaacatgaggatataatgaaat
ccagttttggtacatcagtgatagcaagagcaatccacaagtgcataatg
ggagctgtgctccagggtccctgctcagcttggtgatgccaactggttta
acaaaggggcctattaaagagggggtgtagagagatggattcagtactta
aggactcttagttcaattccagtacctacatggtggttaacgaacaacta
taaccatagcctaggggttccaacaggcatgtacttggctcacaaacatg
catgtaggcaaaatattcacacacacacacaattttttaaaagatgtgac
ttgggaaagagtgcacagacacctgaagactctacccagtagacatctaa
gaaaacaggacacctagagtggtccctccagggctgggcaagtggcacag
gatgccactgtttgaatttaaacccatgagttagtccccaacacagtaga
tgtcatggaagaaaaatgaagagcacggctcagagatggatgggtggtgt
agaaaatatgtagcactcaatgtgtacgtatgcatgtgactgcctggagg
aggaaaggtacatggaaatgccctgagtacagagctggagacagggagcc
cacaagggaacatgaaagaaacaaaaagatgattgactcgttcccttttc
ttcatttaacccagacttttaagaaatggagtgggtgactaaccaggtca
gttctgctc
gaattctttgtttagctctgtaccccatttttaatagggttatttggttc
tcttgagttctttgtatatattggatactagccctctattggatgtaggg
ttggtaaagatcttttcccaatctattggttgctgtttttgttgttgttg
ggttttttttgtttgtttttgtttttgtttaaggtcacatttttaaattc
ttgatcttagagcataagccattggtgttctgttcaggaaatttggggac
agagagtcattgtgaatctgataaacttcagggacttcctaagatttctg
ggctgtttccttccttgagtctctttgtttctttgtttgttttttgaaat
ggagtttctttagtccagccagtccttaaatgtactatttagatcaggtt
ggccttgaactcacagagatttcctacttctttctcctgagtactgggat
taaaggcatgtgccaccttgctcagccactttctgagtcataacaagcat
tccttcagaagtccctgactctgaaaaagcttgctatacagcacaatctt
ttctttttctttttttctttattttatgttgattggttagtttttgtgtg
tgttatgtcaatgggtatgcattgacatagtgcttgtgtgtaagtcagaa
gccaactttaggtgatggttctcttttttatgatgtgtggttctgaatat
tgaaaatcaggttatcaggcaggcctgctgttatttgctgactatattgt
atatagtatatttatatatgtctgttgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_35294843_35295854
seq2: B6Ng01-010H12.b_47_1050 (reverse)

seq1  GAACTGACCTGGTTAGTCACCCCACTCCATGTCTTTAAAAGTCTGGGGTT  50
      ||||||||||||||||||| |||||||||| || |||||||||| |||||
seq2  GAACTGACCTGGTTAGTCA-CCCACTCCATTTC-TTAAAAGTCT-GGGTT  47

seq1  AAATGAAAGAAAAGGGAACGGGTCATTCATCTTTTTTGTTTTCTTTCCTT  100
      ||||| |||||||||||||| |||| ||||||||||   ||||||| | |
seq2  AAATG-AAGAAAAGGGAACGAGTCAATCATCTTTTT--GTTTCTTT-CAT  93

seq1  GTTCCCTTGTGGGCTCCCTGTCTCCAGCTCTGTACTCAGGGCATTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTGTGGGCTCCCTGTCTCCAGCTCTGTACTCAGGGCATTTCCAT  143

seq1  GTACCTTTTCCTCCTCCAGGCAGTCACATGCATACGTACACATTGAGTGC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACC-TTTCCTCCTCCAGGCAGTCACATGCATACGTACACATTGAGTGC  192

seq1  TACATATTTTCTACACCACCCATCCATCTCTGAGCCGTGCTCTTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTTCTACACCACCCATCCATCTCTGAGCCGTGCTCTTCATTTT  242

seq1  TCTTCCATGACATCTACTGTGTTGGGGACTAACTCATGGGTTTAAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATGACATCTACTGTGTTGGGGACTAACTCATGGGTTTAAATTCA  292

seq1  AACAGTGGCATCCTGTGCCACTTGCCCAGCCCTGGAGGGACCACTCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGCATCCTGTGCCACTTGCCCAGCCCTGGAGGGACCACTCTAGG  342

seq1  TGTCCTGTTTTCTTAGATGTCTACTGGGTAGAGTCTTCAGGTGTCTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTTTTCTTAGATGTCTACTGGGTAGAGTCTTCAGGTGTCTGTGC  392

seq1  ACTCTTTCCCAAGTCACATCTTTTAAAAAATTGTGTGTGTGTGTGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCCCAAGTCACATCTTTTAAAAAATTGTGTGTGTGTGTGAATAT  442

seq1  TTTGCCTACATGCATGTTTGTGAGCCAAGTACATGCCTGTTGGAACCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTACATGCATGTTTGTGAGCCAAGTACATGCCTGTTGGAACCCCT  492

seq1  AGGCTATGGTTATAGTTGTTCGTTAACCACCATGTAGGTACTGGAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGGTTATAGTTGTTCGTTAACCACCATGTAGGTACTGGAATTGA  542

seq1  ACTAAGAGTCCTTAAGTACTGAATCCATCTCTCTACACCCCCTCTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGTCCTTAAGTACTGAATCCATCTCTCTACACCCCCTCTTTAAT  592

seq1  AGGCCCCTTTGTTAAACCAGTTGGCATCACCAAGCTGAGCAGGGACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCTTTGTTAAACCAGTTGGCATCACCAAGCTGAGCAGGGACCCTG  642

seq1  GAGCACAGCTCCCATTATGCACTTGTGGATTGCTCTTGCTATCACTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGCTCCCATTATGCACTTGTGGATTGCTCTTGCTATCACTGATG  692

seq1  TACCAAAACTGGATTTCATTATATCCTCATGTTAGTCCACCCCACAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAACTGGATTTCATTATATCCTCATGTTAGTCCACCCCACAGCAG  742

seq1  GTGATATTGGAAGACTCTGCTCCTGTCTGTTCTGAAGTCCCAAGATCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTGGAAGACTCTGCTCCTGTCTGTTCTGAAGTCCCAAGATCTGC  792

seq1  ATAGAGCTGTCAACTAGAGCTGCCTGTGCAGTACTGCTCTGTGCTGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTGTCAACTAGAGCTGCCTGTGCAGTACTGCTCTGTGCTGGGTT  842

seq1  CCTATGTGTCAGGTTCCTTGTCTGATCCCAGCTCCATCCTTGTTTTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGTCAGGTTCCTTGTCTGATCCCAGCTCCATCCTTGTTTTGCTA  892

seq1  AAATTCTACATTTTTGGTAGCTAAGAAATATAACATAGAGCCCCTACCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTACATTTTTGGTAGCTAAGAAATATAACATAGAGCCCCTACCTC  942

seq1  TTGATTTTGAAGTTATCCTTTTTGCAGTCTAGTTCCTTTTAGTTTAGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTGAAGTTATCCTTTTTGCAGTCTAGTTCCTTTTAGTTTAGCTG  992

seq1  GGTATAGAATTC  1012
      ||||||||||||
seq2  GGTATAGAATTC  1004

seq1: chr5_35130997_35131773
seq2: B6Ng01-010H12.g_66_845

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTC  50

seq1  TCTTGAGTTCTTTGTATATATTGGATACTAGCCCTCTATTGGATGTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTCTTTGTATATATTGGATACTAGCCCTCTATTGGATGTAGGG  100

seq1  TTGGTAAAGATCTTTTCCCAATCTATTGGTTGCTGTTTTTGTTGTTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAGATCTTTTCCCAATCTATTGGTTGCTGTTTTTGTTGTTGTTG  150

seq1  GGTTTTTTTTGTTTGTTTTTGTTTTTGTTTAAGGTCACATTTTTAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTGTTTGTTTTTGTTTTTGTTTAAGGTCACATTTTTAAATTC  200

seq1  TTGATCTTAGAGCATAAGCCATTGGTGTTCTGTTCAGGAAATTTGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTAGAGCATAAGCCATTGGTGTTCTGTTCAGGAAATTTGGGGAC  250

seq1  AGAGAGTCATTGTGAATCTGATAAACTTCAGGGACTTCCTAAGATTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCATTGTGAATCTGATAAACTTCAGGGACTTCCTAAGATTTCTG  300

seq1  GGCTGTTTCCTTCCTTGAGTCTCTTTGTTTCTTTGTTTGTTTTTTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTCCTTCCTTGAGTCTCTTTGTTTCTTTGTTTGTTTTTTGAAAT  350

seq1  GGAGTTTCTTTAGTCCAGCCAGTCCTTAAATGTACTATTTAGATCAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCTTTAGTCCAGCCAGTCCTTAAATGTACTATTTAGATCAGGTT  400

seq1  GGCCTTGAACTCACAGAGATTTCCTACTTCTTTCTCCTGAGTACTGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAACTCACAGAGATTTCCTACTTCTTTCTCCTGAGTACTGGGAT  450

seq1  TAAAGGCATGTGCCACCTTGCTCAGCCACTTTCTGAGTCATAACAAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGTGCCACCTTGCTCAGCCACTTTCTGAGTCATAACAAGCAT  500

seq1  TCCTTCAGAAGTCCCTGACTCTGAAAAAGCTTGCTATACAGCACAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGAAGTCCCTGACTCTGAAAAAGCTTGCTATACAGCACAATCTT  550

seq1  TTCTTTTTCTTTTTTTCTTTATTTTATGTTGATTGGTTAG-TTTTGTGTG  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTTTTTCTTTTTTTCTTTATTTTATGTTGATTGGTTAGTTTTTGTGTG  600

seq1  TGTTATGTCAATGGGTATGCATTGACATAGTGCTTGTGTGTAAGTCAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTCAATGGGTATGCATTGACATAGTGCTTGTGTGTAAGTCAGAA  650

seq1  GCCAACTTTCAGGTGATGGTTCTC-TTTTTATGATGTGT-GTTCTGAATA  697
      ||||||||| |||||||||||||| |||||||||||||| ||||||||||
seq2  GCCAACTTT-AGGTGATGGTTCTCTTTTTTATGATGTGTGGTTCTGAATA  699

seq1  TTG-AAATCAGGTTATCAGGCAGGCCTGCTGTTATTTGCTGACTACA-TG  745
      ||| ||||||||||||||||||||||||||||||||||||||||| | ||
seq2  TTGAAAATCAGGTTATCAGGCAGGCCTGCTGTTATTTGCTGACTATATTG  749

seq1  TAGAAAGTATATTTTAGATATGTCTGTTGAGT  777
      || | |||||| |||| ||||||||||||| |
seq2  TATATAGTATA-TTTATATATGTCTGTTGAAT  780