BAC Information

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BAC

Clone NameB6Ng01-010L15
Chromosome5 (Build37)4 (Build37)
Map Location 87,145,664 - 87,146,75894,670,200 - 94,670,437
singlet/doubletsingletsinglet
Overlap geneTmprss11e
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010L15.bB6Ng01-010L15.g
ACCDH846312DH846313
length1,0731,071
definitionDH846312|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L15, 5' end.DH846313|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,145,664 - 87,146,758)(94,670,200 - 94,670,437)
sequence
gaattcagattgtcagacttagcaccaagtgcctttacctgctgagccat
cttacaatttaaaaaataaatattctgttaccaattctgtaactagtaga
tgtgttctttaaataactatgattgctcagctataagagaatgaactact
aagtctagaaatttctaggtttttaaattttcacatttaattttgtcaaa
tacaccacaagtccacaattatctgcaaattctattgtaaacaagcaata
tcgaagtgcttttatttagagtagattgacatttattttctgtctatggc
taaaataataataataataacacatgcaaagagtggttttgcttcttctt
caatagttgtctaactcactcccctccattttcgtggtctcaggcacctg
tagacccaatctgaaattctcccaatcttgctgttccttattggaactca
gagacaaaacaaaaggccatgagataggcacaaatcatgcaaattattct
gtcactggagaatccacccaaagcacaggtaaatgttctagagtgttacc
ttcctgcaatcaggtaacacaatcataatgaatacattcaacttacaatg
gttgaaatagttgtctgattctgtcttgttgatttctgaaataaatacaa
atgatgaataagacggagtgagcaaaacaaaatttcactgtctgtgcttt
tcgaccccagacagctgataaatctctaggacagtatccctgggttataa
ggaaataaatatagctaggttattacagacatgtatttttgtatcatttc
aaagaggaaaggggaatgaacaatgagcctggggctctggtgtggacaag
aagcacccaggtaacttgtttataatgtaaattactgttgcatttctcat
aactttgatttagaagtttgttgaaatctagatgtgatatttgtactaga
aaataggattctggagtctgtacccctcttaataaatttctattaaactg
catattgattcctgatgcacggtagtttacgagcatcacctcgattttaa
ttattattatttttttaccatat
gaattcaaagtcttagcttcttgtattgaggcagagacagaaaaaatatt
caaagaaaaaaacaaactttcaaatctataataattttatatggagtagg
caagccagcttgtaatgtctctataagttctacagcctatttgacttttc
ataaatcttaaatttaaactttattttgaacaacaccttgatagatctat
agcaatattgtttagctaaaaaattattccccagaggcaaggggaggcaa
ggtcccaagaacttccctaggcagggtttgcaaaacaaaagaaatgccac
acaagccttatctgaggctgatctgagctttgcattaactcaaatgtaaa
tatttcttaacctgagcatactgcctgagtcctgacacaaatattatctc
tcctgtagtgaggaacaatttgactgtctatttctccaattttggatagt
ctttcttaagatgacttatacttaaaacattccgtataactttagtacta
tggaaaaaaaaattgctttactgtaatcccctgcaaggcagccaccatag
ccaaactgattatataagagtccaatttctgcacaaaaatgaatatacct
agataagtctgtcttgctttgtatggccggatgagtgagctgcattagcc
atctcataagatgatgactcttgtaaccatcctaattacaatatatgggt
gagttaaaaatcttaagtttgtgatcaaactgcaaactacagtcaatgga
acattggcaattttaaccataatttttaaggtttggtttttttttttttt
tttttggaatgttaaaatgtttatataactttggttaagcaaaacccaat
tttaaacaatttattatcttcaaaaatcaataccagaagctgggcagtgg
tggtgcacccctttaatctcagcacttgggaggcagaggcaggcagattt
ctgagttcgagaccagcctggtctacagagtgagttctaggacagcaggt
ctatacagagacaccttgtcctcgaaaaattttaaaagccaaaaccaacc
gaaaaaccaaaaccaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87145664_87146758
seq2: B6Ng01-010L15.b_45_1117

seq1  GAATTCAGATTGTCAGACTTAGCACCAAGTGCCTTTACCTGCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTGTCAGACTTAGCACCAAGTGCCTTTACCTGCTGAGCCAT  50

seq1  CTTACAATTTAAAAAATAAATATTCTGTTACCAATTCTGTAACTAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATTTAAAAAATAAATATTCTGTTACCAATTCTGTAACTAGTAGA  100

seq1  TGTGTTCTTTAAATAACTATGATTGCTCAGCTATAAGAGAATGAACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTAAATAACTATGATTGCTCAGCTATAAGAGAATGAACTACT  150

seq1  AAGTCTAGAAATTTCTAGGTTTTTAAATTTTCACATTTAATTTTGTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGAAATTTCTAGGTTTTTAAATTTTCACATTTAATTTTGTCAAA  200

seq1  TACACCACAAGTCCACAATTATCTGCAAATTCTATTGTAAACAAGCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCACAAGTCCACAATTATCTGCAAATTCTATTGTAAACAAGCAATA  250

seq1  TCGAAGTGCTTTTATTTAGAGTAGATTGACATTTATTTTCTGTCTATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGTGCTTTTATTTAGAGTAGATTGACATTTATTTTCTGTCTATGGC  300

seq1  TAAAATAATAATAATAATAACACATGCAAAGAGTGGTTTTGCTTCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATAATAATAATAACACATGCAAAGAGTGGTTTTGCTTCTTCTT  350

seq1  CAATAGTTGTCTAACTCACTCCCCTCCATTTTCGTGGTCTCAGGCACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTGTCTAACTCACTCCCCTCCATTTTCGTGGTCTCAGGCACCTG  400

seq1  TAGACCCAATCTGAAATTCTCCCAATCTTGCTGTTCCTTATTGGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCAATCTGAAATTCTCCCAATCTTGCTGTTCCTTATTGGAACTCA  450

seq1  GAGACAAAACAAAAGGCCATGAGATAGGCACAAATCATGCAAATTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAACAAAAGGCCATGAGATAGGCACAAATCATGCAAATTATTCT  500

seq1  GTCACTGGAGAATCCACCCAAAGCACAGGTAAATGTTCTAGAGTGTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGAGAATCCACCCAAAGCACAGGTAAATGTTCTAGAGTGTTACC  550

seq1  TTCCTGCAATCAGGTAACACAATCATAATGAATACATTCAACTTACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAATCAGGTAACACAATCATAATGAATACATTCAACTTACAATG  600

seq1  GTTGAAATAGTTGTCTGATTCTGTCTTGTTGATTTCTGAAATAAATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATAGTTGTCTGATTCTGTCTTGTTGATTTCTGAAATAAATACAA  650

seq1  ATGATGAATAAGACGGAGTGAGCAAAACAAAATTTCACTGTCTGTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAATAAGACGGAGTGAGCAAAACAAAATTTCACTGTCTGTGCTTT  700

seq1  TCGACCCCAGACAGCTGATAAATCTCTAGGACAGTATCCCTGGGTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCCCAGACAGCTGATAAATCTCTAGGACAGTATCCCTGGGTTATAA  750

seq1  GGAAATAAATATAGCTAGGTTATTACAGACATGTATTTTTGTATCATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATATAGCTAGGTTATTACAGACATGTATTTTTGTATCATTTC  800

seq1  AAAGAGGAAAGGGGGAATGAACAATGAGCCTGGGGCTCTGGTGTGGACAA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAAA-GGGGAATGAACAATGAGCCTGGGGCTCTGGTGTGGACAA  849

seq1  GAAGCACCCAGGTAACTTGTTTATAATGTAAATTACTGTTGCATTTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAGCACCCAGGTAACTTGTTTATAATGTAAATTACTGTTGCATTTCTC-  898

seq1  ATAACTTTGATTTAGAAGTTTTGTTGAAATCTAAGAATGTGAATATTTGT  950
      |||||||||||||||||| ||||||||||||||   ||||| ||||||||
seq2  ATAACTTTGATTTAGAAG-TTTGTTGAAATCTA--GATGTG-ATATTTGT  944

seq1  ACTAGAAAATAGGATTCTGGAAGTCTGTACCCCCTCTTTAATAAATATCT  1000
      |||||||||||||||||||| |||||||| |||||| ||||||||| |||
seq2  ACTAGAAAATAGGATTCTGG-AGTCTGTA-CCCCTC-TTAATAAATTTCT  991

seq1  AATTAAACTGCAATATTGATTCCCTGAATGCAACGGTAGTTTTACGAAGC  1050
       |||||||||| ||||||||| |||| |||| ||||||| |||||| |||
seq2  -ATTAAACTGC-ATATTGATT-CCTG-ATGC-ACGGTAG-TTTACG-AGC  1034

seq1  ATCACTTCAGAATATTTTAATATATTATATATATTTATACCATAT  1095
      ||||| ||     |||||||| |||||| ||| ||| ||||||||
seq2  ATCACCTC----GATTTTAAT-TATTAT-TATTTTTTTACCATAT  1073

seq1: chr4_94670200_94670437
seq2: B6Ng01-010L15.g_955_1135

seq1  TGGGCAGTGGTGACGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  50
      ||||||||||||  |||| ||||||||| |||||||||||||||||||||
seq2  TGGGCAGTGGTGGTGCACCCCTTTAATCTCAGCACTTGGGAGGCAGAGGC  50

seq1  AGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  100
      |||  |||||||||||||||| ||||||||||||||| ||||||||| ||
seq2  AGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGAGTGAGTTCTAG  100

seq1  GACAGCCAGGGCTATACAGAGAAACCCTGT-CTCAAAAAACAAAACAAAA  149
      ||||| |||| ||||||||||| ||| ||| ||| ||||  |    ||||
seq2  GACAG-CAGGTCTATACAGAGACACCTTGTCCTCGAAAA--ATTTTAAAA  147

seq1  ACCAAAACCACCACCACCACCACCACCACCACCACCACCACCAACAACAA  199
       |||||||||                             |||        
seq2  GCCAAAACCA-----------------------------ACC--------  160

seq1  CAACAACAACAACAACAAAAAAAACCAAAACCAAACAAA  238
                         ||||||||||||||||||||
seq2  ------------------GAAAAACCAAAACCAAACAAA  181